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Cfap92 cilia and flagella associated protein 92 [ Mus musculus (house mouse) ]

Gene ID: 613264, updated on 2-Nov-2024

Summary

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Official Symbol
Cfap92provided by MGI
Official Full Name
cilia and flagella associated protein 92provided by MGI
Primary source
MGI:MGI:3586838
See related
Ensembl:ENSMUSG00000089997 AllianceGenome:MGI:3586838
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810020O05Rik
Summary
Is expressed in brain; choroid plexus; nasal cavity epithelium; nasopharynx; and spinal cord. Orthologous to human CFAP92 (cilia and flagella associated protein 92 (putative)). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 5.8), bladder adult (RPKM 3.3) and 7 other tissues See more
Orthologs
human all
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Genomic context

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See Cfap92 in Genome Data Viewer
Location:
6 D1; 6 38.75 cM
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87652572..87709717, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87675590..87722747, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene aprataxin and PNKP like factor Neighboring gene predicted gene, 38852 Neighboring gene predicted gene, 44097 Neighboring gene STARR-positive B cell enhancer ABC_E9276 Neighboring gene RIKEN cDNA E230015B07 gene Neighboring gene STARR-positive B cell enhancer ABC_E1067 Neighboring gene STARR-seq mESC enhancer starr_16564 Neighboring gene STARR-positive B cell enhancer ABC_E9277 Neighboring gene EF hand and coiled-coil domain containing 1 Neighboring gene predicted gene, 34414 Neighboring gene 60S ribosomal protein L3 related

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identifying new candidate genes for hereditary facial paresis on chromosome 3q21-q22 by RNA in situ hybridization in mouse. van der Zwaag B, et al. Genomics, 2005 Jul. PMID 15953540
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein CFAP92

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001384219.1 → NP_001371148.1  uncharacterized protein CFAP92

    Status: VALIDATED

    Source sequence(s)
    AC158626
    UniProtKB/TrEMBL
    A0A571BDQ7
    Related
    ENSMUSP00000158817.2, ENSMUST00000238521.2
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

RNA

  1. NR_045482.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158626

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87652572..87709717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036152255.1 → XP_036008148.1  uncharacterized protein CFAP92 isoform X1

    UniProtKB/TrEMBL
    A0A571BDQ7
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

  2. XM_036152254.1 → XP_036008147.1  uncharacterized protein CFAP92 isoform X1

    UniProtKB/TrEMBL
    A0A571BDQ7
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

  3. XM_036152251.1 → XP_036008144.1  uncharacterized protein CFAP92 isoform X1

    UniProtKB/TrEMBL
    A0A571BDQ7
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

  4. XM_036152253.1 → XP_036008146.1  uncharacterized protein CFAP92 isoform X1

    UniProtKB/TrEMBL
    A0A571BDQ7
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

  5. XM_036152257.1 → XP_036008150.1  uncharacterized protein CFAP92 isoform X2

    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

  6. XM_036152252.1 → XP_036008145.1  uncharacterized protein CFAP92 isoform X1

    UniProtKB/TrEMBL
    A0A571BDQ7
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

  7. XM_036152256.1 → XP_036008149.1  uncharacterized protein CFAP92 isoform X1

    UniProtKB/TrEMBL
    A0A571BDQ7
    Conserved Domains (1) summary
    pfam15084
    Location:109 → 203
    DUF4550; Domain of unknown function (DUF4550)

RNA

  1. XR_004933614.1 RNA Sequence

  2. XR_004933613.1 RNA Sequence

  3. XR_004933615.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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