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AMACR alpha-methylacyl-CoA racemase [ Canis lupus familiaris (dog) ]

Gene ID: 612603, updated on 17-Aug-2024

Summary

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Official Symbol
AMACRprovided by VGNC
Official Full Name
alpha-methylacyl-CoA racemaseprovided by VGNC
Primary source
VGNC:VGNC:37824
See related
Ensembl:ENSCAFG00845001354
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See AMACR in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (74321712..74342286)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (73431203..73451716)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (74725962..74746514)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (74068256..74088061)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (74191815..74212352)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene retinoic acid induced 14 Neighboring gene uncharacterized LOC111095647 Neighboring gene uncharacterized LOC111095648 Neighboring gene C1q and TNF related 3 Neighboring gene protein SET-like Neighboring gene uncharacterized LOC119871571 Neighboring gene solute carrier family 45 member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-methylacyl-CoA racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-methylacyl-CoA racemase
XP_038330189.1
XP_038391315.1
XP_038455591.1
XP_038519904.1
XP_855429.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    74321712..74342286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038663976.1 → XP_038519904.1  alpha-methylacyl-CoA racemase

    UniProtKB/TrEMBL
    A0A8C0KSC5, A0A8C0LUE5, A0A8C0YWD2, A0A8I3MKB2
    Related
    ENSCAFP00845001865.1, ENSCAFT00845002349.1
    Conserved Domains (1) summary
    COG1804
    Location:3 → 373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    74068256..74088061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038474261.1 → XP_038330189.1  alpha-methylacyl-CoA racemase

    Conserved Domains (1) summary
    COG1804
    Location:3 → 373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    74191815..74212352
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038599663.1 → XP_038455591.1  alpha-methylacyl-CoA racemase

    Conserved Domains (1) summary
    COG1804
    Location:3 → 373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    74725962..74746514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038535387.1 → XP_038391315.1  alpha-methylacyl-CoA racemase

    UniProtKB/TrEMBL
    A0A8C0KSC5, A0A8C0LUE5, A0A8C0YWD2, A0A8I3MKB2
    Conserved Domains (1) summary
    COG1804
    Location:3 → 373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    73431203..73451716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_850336.7 → XP_855429.2  alpha-methylacyl-CoA racemase

    UniProtKB/TrEMBL
    A0A8C0KSC5, A0A8C0LUE5, A0A8C0YWD2, A0A8I3MKB2
    Conserved Domains (1) summary
    COG1804
    Location:3 → 373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]
Nucleotide Protein
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