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SYP synaptophysin [ Canis lupus familiaris (dog) ]

Gene ID: 612557, updated on 17-Aug-2024

Summary

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Official Symbol
SYPprovided by VGNC
Official Full Name
synaptophysinprovided by VGNC
Primary source
VGNC:VGNC:54605
See related
Ensembl:ENSCAFG00845031053
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See SYP in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (42429161..42441205, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (16666206..16678233, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (42495540..42507567, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (42413127..42425154, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (42400777..42412809, complement)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 45 Neighboring gene prickle planar cell polarity protein 3 Neighboring gene calcium voltage-gated channel subunit alpha1 F Neighboring gene coiled-coil domain containing 22 Neighboring gene forkhead box P3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptophysin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    42429161..42441205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038450003.1 → XP_038305931.1  synaptophysin

    UniProtKB/TrEMBL
    A0A8I3QDP8, A0A8I3SCX3
    Related
    ENSCAFP00845043417.1, ENSCAFT00845055203.1
    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    42413127..42425154 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038523461.1 → XP_038379389.1  synaptophysin

    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    42400777..42412809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038651942.1 → XP_038507870.1  synaptophysin

    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    42495540..42507567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038587435.1 → XP_038443363.1  synaptophysin

    UniProtKB/TrEMBL
    A0A8C0L223, A0A8C0SE47, A0A8I3QDP8, A0A8P0SK52
    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    16666206..16678233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038464918.1 → XP_038320846.1  synaptophysin

    UniProtKB/TrEMBL
    A0A8C0L223, A0A8C0SE47, A0A8I3QDP8, A0A8P0SK52
    Conserved Domains (1) summary
    pfam01284
    Location:22 → 221
    MARVEL; Membrane-associating domain
Nucleotide Protein
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