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LSP1 lymphocyte specific protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 611553, updated on 17-Aug-2024

Summary

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Official Symbol
LSP1provided by VGNC
Official Full Name
lymphocyte specific protein 1provided by VGNC
Primary source
VGNC:VGNC:42849
See related
Ensembl:ENSCAFG00845010606
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LSP1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (46769276..46808582)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (44698103..44737407)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (46543073..46582385)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (46229553..46255843)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (45796936..45836174)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene synaptotagmin 8 Neighboring gene troponin I2, fast skeletal type Neighboring gene proline-rich protein 33-like Neighboring gene troponin T3, fast skeletal type Neighboring gene mitochondrial ribosomal protein L23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lymphocyte-specific protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    46769276..46808582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038424671.1 → XP_038280599.1  lymphocyte-specific protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I3N667, A0A8P0NS34
    Related
    ENSCAFP00845014588.1, ENSCAFT00845018685.1
    Conserved Domains (1) summary
    pfam02029
    Location:215 → 309
    Caldesmon

  2. XM_038424672.1 → XP_038280600.1  lymphocyte-specific protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0TPT8
    Conserved Domains (1) summary
    pfam02029
    Location:213 → 307
    Caldesmon

  3. XM_038424668.1 → XP_038280596.1  lymphocyte-specific protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TPT8, A0A8I3RY25, A0A8P0T366
    Related
    ENSCAFP00845014640.1, ENSCAFT00845018751.1
    Conserved Domains (1) summary
    pfam02029
    Location:213 → 307
    Caldesmon

  4. XM_038424669.1 → XP_038280597.1  lymphocyte-specific protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TPT8
    Conserved Domains (1) summary
    pfam02029
    Location:213 → 305
    Caldesmon

  5. XM_038424670.1 → XP_038280598.1  lymphocyte-specific protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3N667, A0A8P0NS34
    Related
    ENSCAFP00845014763.1, ENSCAFT00845018896.1
    Conserved Domains (1) summary
    pfam02029
    Location:224 → 318
    Caldesmon

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    46229553..46255843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038501852.1 → XP_038357780.1  lymphocyte-specific protein 1 isoform X6

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    45796936..45836174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038627694.1 → XP_038483622.1  lymphocyte-specific protein 1 isoform X4

  2. XM_038627695.1 → XP_038483623.1  lymphocyte-specific protein 1 isoform X5

  3. XM_038627691.1 → XP_038483619.1  lymphocyte-specific protein 1 isoform X1

    Conserved Domains (1) summary
    pfam02029
    Location:213 → 307
    Caldesmon

  4. XM_038627692.1 → XP_038483620.1  lymphocyte-specific protein 1 isoform X2

  5. XM_038627693.1 → XP_038483621.1  lymphocyte-specific protein 1 isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    46543073..46582385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038563573.1 → XP_038419501.1  lymphocyte-specific protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I3N667, A0A8P0NS34
    Conserved Domains (1) summary
    pfam02029
    Location:215 → 309
    Caldesmon

  2. XM_038563571.1 → XP_038419499.1  lymphocyte-specific protein 1 isoform X9

  3. XM_038563569.1 → XP_038419497.1  lymphocyte-specific protein 1 isoform X7

  4. XM_038563570.1 → XP_038419498.1  lymphocyte-specific protein 1 isoform X8

  5. XM_038563572.1 → XP_038419500.1  lymphocyte-specific protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3N667, A0A8P0NS34
    Conserved Domains (1) summary
    pfam02029
    Location:224 → 318
    Caldesmon

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    44698103..44737407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005631338.3 → XP_005631395.2  lymphocyte-specific protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8I3N667, A0A8P0NS34
    Conserved Domains (1) summary
    pfam02029
    Location:215 → 309
    Caldesmon

  2. XM_005631339.4 → XP_005631396.2  lymphocyte-specific protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C0TPT8
    Conserved Domains (1) summary
    pfam02029
    Location:213 → 307
    Caldesmon

  3. XM_038454021.1 → XP_038309949.1  lymphocyte-specific protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TPT8, A0A8I3RY25, A0A8P0T366
    Conserved Domains (1) summary
    pfam02029
    Location:213 → 307
    Caldesmon

  4. XM_038454022.1 → XP_038309950.1  lymphocyte-specific protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0TPT8
    Conserved Domains (1) summary
    pfam02029
    Location:213 → 305
    Caldesmon

  5. XM_005631336.3 → XP_005631393.3  lymphocyte-specific protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8I3N667, A0A8P0NS34
    Conserved Domains (1) summary
    pfam02029
    Location:224 → 318
    Caldesmon
Nucleotide Protein
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