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CLEC1B C-type lectin domain family 1 member B [ Canis lupus familiaris (dog) ]

Gene ID: 611394, updated on 17-Aug-2024

Summary

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Official Symbol
CLEC1Bprovided by VGNC
Official Full Name
C-type lectin domain family 1 member Bprovided by VGNC
Primary source
VGNC:VGNC:49802
See related
Ensembl:ENSCAFG00845027404
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
CLEC9A
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Genomic context

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See CLEC1B in Genome Data Viewer
Location:
chromosome: 27
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (36265452..36310548, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (10659446..10704289)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (10186485..10226204)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (36153300..36179509, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (36175817..36221143, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene oxidized low density lipoprotein receptor 1 Neighboring gene C-type lectin domain containing 7A Neighboring gene C-type lectin domain family 1 member A Neighboring gene C-type lectin domain family 12 member B Neighboring gene uncharacterized LOC106557878 Neighboring gene C-type lectin domain family 12 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 9 member A; C-type lectin domain family 1 member B
Names
C-type lectin domain containing 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    36265452..36310548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038439025.1 → XP_038294953.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_038439024.1 → XP_038294952.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_038439026.1 → XP_038294954.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Related
    ENSCAFP00845037855.1, ENSCAFT00845048262.1
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  4. XM_038439027.1 → XP_038294955.1  C-type lectin domain family 1 member B isoform X2

    UniProtKB/TrEMBL
    A0A8C0JXJ5, A0A8C0SJZ4, A0A8I3PY36
    Related
    ENSCAFP00845037928.1, ENSCAFT00845048344.1
    Conserved Domains (1) summary
    cd03593
    Location:147 → 263
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    36153300..36179509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513683.1 → XP_038369611.1  C-type lectin domain family 9 member A isoform X1

    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_038513684.1 → XP_038369612.1  C-type lectin domain family 1 member B isoform X2

    Conserved Domains (1) summary
    cd03593
    Location:147 → 263
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    36175817..36221143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038641506.1 → XP_038497434.1  C-type lectin domain family 9 member A isoform X1

    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_038641505.1 → XP_038497433.1  C-type lectin domain family 9 member A isoform X1

    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_038641507.1 → XP_038497435.1  C-type lectin domain family 9 member A isoform X1

    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  4. XM_038641508.1 → XP_038497436.1  C-type lectin domain family 1 member B isoform X2

    Conserved Domains (1) summary
    cd03593
    Location:147 → 263
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    10186485..10226204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038576766.1 → XP_038432694.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_038576767.1 → XP_038432695.1  C-type lectin domain family 1 member B isoform X2

    UniProtKB/TrEMBL
    A0A8C0JXJ5, A0A8C0SJZ4, A0A8I3PY36
    Conserved Domains (1) summary
    cd03593
    Location:147 → 263
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_038576765.1 → XP_038432693.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10659446..10704289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038459808.1 → XP_038315736.1  C-type lectin domain family 1 member B isoform X2

    UniProtKB/TrEMBL
    A0A8C0JXJ5, A0A8C0SJZ4, A0A8I3PY36
    Conserved Domains (1) summary
    cd03593
    Location:147 → 263
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_038459807.1 → XP_038315735.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  3. XM_038459806.1 → XP_038315734.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  4. XM_022411024.2 → XP_022266732.1  C-type lectin domain family 9 member A isoform X1

    UniProtKB/TrEMBL
    A0A8C0PBA8, A0A8C0SIU7, A0A8I3PY16
    Conserved Domains (1) summary
    cd03593
    Location:343 → 464
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
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