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PYGM glycogen phosphorylase, muscle associated [ Canis lupus familiaris (dog) ]

Gene ID: 611078, updated on 17-Aug-2024

Summary

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Official Symbol
PYGMprovided by VGNC
Official Full Name
glycogen phosphorylase, muscle associatedprovided by VGNC
Primary source
VGNC:VGNC:45226
See related
Ensembl:ENSCAFG00845029235
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See PYGM in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (53439715..53451957)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (51005808..51018059)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (52904684..52916934)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (52534631..52546873)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (52120553..52132799)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase kinase 2 Neighboring gene splicing factor 1 Neighboring gene RAS guanyl releasing protein 2 Neighboring gene neurexin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen phosphorylase, muscle form
Names
phosphorylase, glycogen, muscle
phosphorylase, glycogen; muscle (McArdle syndrome, glycogen storage disease type V)
XP_038281069.1
XP_038357320.1
XP_038420005.1
XP_038484139.1
XP_853123.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    53439715..53451957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038425141.1 → XP_038281069.1  glycogen phosphorylase, muscle form

    UniProtKB/TrEMBL
    A0A8C0R150, A0A8C0RCX9, A0A8C0TL09, A0A8I3Q2T0, A0A8I3Q7U5
    Related
    ENSCAFP00845040658.1, ENSCAFT00845051816.1
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    52534631..52546873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038501392.1 → XP_038357320.1  glycogen phosphorylase, muscle form

    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    52120553..52132799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038628211.1 → XP_038484139.1  glycogen phosphorylase, muscle form

    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    52904684..52916934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038564077.1 → XP_038420005.1  glycogen phosphorylase, muscle form

    UniProtKB/TrEMBL
    A0A8C0R150, A0A8C0RCX9, A0A8C0TL09, A0A8I3Q2T0, A0A8I3Q7U5
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    51005808..51018059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_848030.5 → XP_853123.1  glycogen phosphorylase, muscle form

    UniProtKB/TrEMBL
    A0A8C0R150, A0A8C0RCX9, A0A8C0TL09, A0A8I3Q2T0, A0A8I3Q7U5
    Conserved Domains (1) summary
    cd04300
    Location:29 → 828
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
Nucleotide Protein
Heading Accession and Version

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