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BEND6 BEN domain containing 6 [ Canis lupus familiaris (dog) ]

Gene ID: 610495, updated on 17-Aug-2024

Summary

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Official Symbol
BEND6provided by VGNC
Official Full Name
BEN domain containing 6provided by VGNC
Primary source
VGNC:VGNC:38432
See related
Ensembl:ENSCAFG00845013601
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See BEND6 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (24693267..24752305)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (24084247..24143298)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (24423435..24482648)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (24190941..24249996)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (24291978..24351309)

Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene dystonin Neighboring gene cytochrome c oxidase assembly protein COX20, mitochondrial-like Neighboring gene transcription factor BTF3-like Neighboring gene calmodulin-A-like Neighboring gene KIAA1586 ortholog Neighboring gene zinc finger protein 451 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 6
Names
BEN domain-containing protein 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051816.1 Reference ROS_Cfam_1.0

    Range
    24693267..24752305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038683838.1 → XP_038539766.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Related
    ENSCAFP00845019059.1, ENSCAFT00845024262.1
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_038683841.1 → XP_038539769.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_038683837.1 → XP_038539765.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_038683839.1 → XP_038539767.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  5. XM_038683840.1 → XP_038539768.1  BEN domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8C0MGE9, A0A8I3NT72
    Related
    ENSCAFP00845019068.1, ENSCAFT00845024273.1
    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049272.1 Alternate UMICH_Zoey_3.1

    Range
    24190941..24249996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038492120.1 → XP_038348048.1  BEN domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_038492123.1 → XP_038348051.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_038492124.1 → XP_038348052.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_038492121.1 → XP_038348049.1  BEN domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  5. XM_038492119.1 → XP_038348047.1  BEN domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  6. XM_038492122.1 → XP_038348050.1  BEN domain-containing protein 6 isoform X2

    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

    Range
    24291978..24351309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038618271.1 → XP_038474199.1  BEN domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_038618274.1 → XP_038474202.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_038618268.1 → XP_038474196.1  BEN domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_038618272.1 → XP_038474200.1  BEN domain-containing protein 6 isoform X1

    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  5. XM_038618273.1 → XP_038474201.1  BEN domain-containing protein 6 isoform X2

    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

    Range
    24423435..24482648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038554405.1 → XP_038410333.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_038554408.1 → XP_038410336.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_038554404.1 → XP_038410332.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_038554406.1 → XP_038410334.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  5. XM_038554407.1 → XP_038410335.1  BEN domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8C0MGE9, A0A8I3NT72
    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24084247..24143298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014118092.3 → XP_013973567.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_014118094.3 → XP_013973569.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_038672940.1 → XP_038528868.1  BEN domain-containing protein 6 isoform X3

    Conserved Domains (1) summary
    smart01025
    Location:94 → 175
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_005627497.4 → XP_005627554.1  BEN domain-containing protein 6 isoform X1

    See identical proteins and their annotated locations for XP_005627554.1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  5. XM_014118091.3 → XP_013973566.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8I3S083, A0A8P0NS97
    Conserved Domains (1) summary
    smart01025
    Location:202 → 283
    BEN; The BEN domain is found in diverse animal proteins

  6. XM_014118093.3 → XP_013973568.1  BEN domain-containing protein 6 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KTN8, A0A8C0MGE9, A0A8I3NT72
    Conserved Domains (1) summary
    smart01025
    Location:190 → 271
    BEN; The BEN domain is found in diverse animal proteins
Nucleotide Protein
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