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ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 [ Canis lupus familiaris (dog) ]

Gene ID: 610408, updated on 17-Aug-2024

Summary

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Official Symbol
ATPAF1provided by VGNC
Official Full Name
ATP synthase mitochondrial F1 complex assembly factor 1provided by VGNC
Primary source
VGNC:VGNC:38290
See related
Ensembl:ENSCAFG00845018669
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ATPAF1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 15 NC_051819.1 (13952418..13982757)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 15 NC_006597.4 (13922380..13952720)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 15 NC_049236.1 (13891326..13921872)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 15 NC_049275.1 (13753456..13783984)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 15 NC_049756.1 (13822113..13851974)

Chromosome 15 - NC_051819.1Genomic Context describing neighboring genes Neighboring gene EF-hand calcium binding domain 14 Neighboring gene testis expressed 38 Neighboring gene MOB kinase activator 3C Neighboring gene MAPK interacting serine/threonine kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase mitochondrial F1 complex assembly factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051819.1 Reference ROS_Cfam_1.0

    Range
    13952418..13982757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038687762.1 → XP_038543690.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NY82, A0A8I3PEV0
    Related
    ENSCAFP00845025850.1, ENSCAFT00845033030.1
    Conserved Domains (1) summary
    pfam06644
    Location:95 → 323
    ATP11; ATP11 protein

  2. XM_038687763.1 → XP_038543691.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1

    Conserved Domains (1) summary
    pfam06644
    Location:95 → 277
    ATP11; ATP11 protein

  3. XM_038687764.1 → XP_038543692.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KQB4
    Conserved Domains (1) summary
    pfam06644
    Location:2 → 156
    ATP11; ATP11 protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049275.1 Alternate UMICH_Zoey_3.1

    Range
    13753456..13783984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495765.1 → XP_038351693.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X3

    Conserved Domains (1) summary
    pfam06644
    Location:95 → 323
    ATP11; ATP11 protein

  2. XM_038495766.1 → XP_038351694.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1

    Conserved Domains (1) summary
    pfam06644
    Location:95 → 277
    ATP11; ATP11 protein

  3. XM_038495767.1 → XP_038351695.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X2

    Conserved Domains (1) summary
    pfam06644
    Location:2 → 156
    ATP11; ATP11 protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049756.1 Alternate UNSW_CanFamBas_1.0

    Range
    13822113..13851974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038622013.1 → XP_038477941.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X3

    Conserved Domains (1) summary
    pfam06644
    Location:95 → 323
    ATP11; ATP11 protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049236.1 Alternate UU_Cfam_GSD_1.0

    Range
    13891326..13921872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038558140.1 → XP_038414068.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NY82, A0A8I3PEV0
    Conserved Domains (1) summary
    pfam06644
    Location:95 → 323
    ATP11; ATP11 protein

  2. XM_038558141.1 → XP_038414069.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1

    Conserved Domains (1) summary
    pfam06644
    Location:95 → 277
    ATP11; ATP11 protein

  3. XM_038558142.1 → XP_038414070.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KQB4
    Conserved Domains (1) summary
    pfam06644
    Location:2 → 156
    ATP11; ATP11 protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006597.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    13922380..13952720
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847908.6 → XP_853001.3  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C0NY82, A0A8I3PEV0
    Conserved Domains (1) summary
    pfam06644
    Location:95 → 323
    ATP11; ATP11 protein

  2. XM_022427967.2 → XP_022283675.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1

    Conserved Domains (1) summary
    pfam06644
    Location:95 → 277
    ATP11; ATP11 protein

  3. XM_022427969.2 → XP_022283677.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KQB4
    Conserved Domains (1) summary
    pfam06644
    Location:2 → 156
    ATP11; ATP11 protein
Nucleotide Protein
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