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LXN latexin [ Canis lupus familiaris (dog) ]

Gene ID: 610062, updated on 17-Aug-2024

Summary

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Official Symbol
LXNprovided by VGNC
Official Full Name
latexinprovided by VGNC
Primary source
VGNC:VGNC:42871
See related
Ensembl:ENSCAFG00845024952
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LXN in Genome Data Viewer
Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 23 NC_051827.1 (52601679..52609457, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 23 NC_006605.4 (51772677..51778236, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 23 NC_049244.1 (52520422..52528212, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 23 NC_049283.1 (52182014..52189772, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 23 NC_049764.1 (52234990..52242749, complement)

Chromosome 23 - NC_051827.1Genomic Context describing neighboring genes Neighboring gene arginine and serine rich coiled-coil 1 Neighboring gene uncharacterized LOC119865449 Neighboring gene myeloid leukemia factor 1 Neighboring gene G elongation factor mitochondrial 1 Neighboring gene retinoic acid receptor responder 1 Neighboring gene uncharacterized LOC102157385 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
latexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051827.1 Reference ROS_Cfam_1.0

    Range
    52601679..52609457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038432753.1 → XP_038288681.1  latexin

    UniProtKB/TrEMBL
    A0A8C0P2S3, A0A8I3PT76
    Related
    ENSCAFP00845034517.1, ENSCAFT00845044049.1
    Conserved Domains (1) summary
    pfam06907
    Location:4 → 219
    Latexin

RNA

  1. XR_005300402.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049283.1 Alternate UMICH_Zoey_3.1

    Range
    52182014..52189772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038508077.1 → XP_038364005.1  latexin

    Conserved Domains (1) summary
    pfam06907
    Location:4 → 219
    Latexin

RNA

  1. XR_005343500.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049764.1 Alternate UNSW_CanFamBas_1.0

    Range
    52234990..52242749 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038635509.1 → XP_038491437.1  latexin

    Conserved Domains (1) summary
    pfam06907
    Location:4 → 219
    Latexin

RNA

  1. XR_005411206.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049244.1 Alternate UU_Cfam_GSD_1.0

    Range
    52520422..52528212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038571317.1 → XP_038427245.1  latexin

    UniProtKB/TrEMBL
    A0A8C0P2S3, A0A8I3PT76
    Conserved Domains (1) summary
    pfam06907
    Location:4 → 219
    Latexin

RNA

  1. XR_005377286.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    51772677..51778236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_847886.6 → XP_852979.1  latexin

    UniProtKB/TrEMBL
    A0A8C0P2S3, A0A8I3PT76
    Conserved Domains (1) summary
    pfam06907
    Location:4 → 219
    Latexin
Nucleotide Protein
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