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ATG4B autophagy related 4B cysteine peptidase [ Canis lupus familiaris (dog) ]

Gene ID: 609599, updated on 17-Aug-2024

Summary

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Official Symbol
ATG4Bprovided by VGNC
Official Full Name
autophagy related 4B cysteine peptidaseprovided by VGNC
Primary source
VGNC:VGNC:49762
See related
Ensembl:ENSCAFG00845023776
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ATG4B in Genome Data Viewer
Location:
chromosome: 25
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 25 NC_051829.1 (51692391..51716772)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 25 NC_006607.4 (51712749..51737119)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 25 NC_049246.1 (51558118..51582492)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 25 NC_049285.1 (51542261..51566633)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 25 NC_049766.1 (51281435..51305797)

Chromosome 25 - NC_051829.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 25 Neighboring gene EZH inhibitory protein-like Neighboring gene BCL2 family apoptosis regulator BOK Neighboring gene THAP domain containing 4 Neighboring gene uncharacterized LOC119865877 Neighboring gene deoxythymidylate kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B
Names
ATG4 autophagy related 4 homolog B
XP_005636054.2
XP_022265751.1
XP_038291966.1
XP_038291967.1
XP_038291968.1
XP_038291969.1
XP_038314095.1
XP_038314096.1
XP_038366892.1
XP_038366893.1
XP_038366894.1
XP_038366895.1
XP_038430387.1
XP_038430388.1
XP_038430389.1
XP_038430390.1
XP_038494619.1
XP_038494620.1
XP_038494621.1
XP_038494622.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051829.1 Reference ROS_Cfam_1.0

    Range
    51692391..51716772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436040.1 → XP_038291968.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  2. XM_038436039.1 → XP_038291967.1  cysteine protease ATG4B isoform X2

    UniProtKB/TrEMBL
    A0A8C0LN73
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_038436038.1 → XP_038291966.1  cysteine protease ATG4B isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRZ9, A0A8C0PRI8, A0A8I3PPE0
    Related
    ENSCAFP00845032939.1, ENSCAFT00845042000.1
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  4. XM_038436041.1 → XP_038291969.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049285.1 Alternate UMICH_Zoey_3.1

    Range
    51542261..51566633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038510966.1 → XP_038366894.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  2. XM_038510965.1 → XP_038366893.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_038510964.1 → XP_038366892.1  cysteine protease ATG4B isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  4. XM_038510967.1 → XP_038366895.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049766.1 Alternate UNSW_CanFamBas_1.0

    Range
    51281435..51305797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038638694.1 → XP_038494622.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  2. XM_038638692.1 → XP_038494620.1  cysteine protease ATG4B isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_038638691.1 → XP_038494619.1  cysteine protease ATG4B isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  4. XM_038638693.1 → XP_038494621.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049246.1 Alternate UU_Cfam_GSD_1.0

    Range
    51558118..51582492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038574461.1 → XP_038430389.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  2. XM_038574460.1 → XP_038430388.1  cysteine protease ATG4B isoform X2

    UniProtKB/TrEMBL
    A0A8C0LN73
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_038574459.1 → XP_038430387.1  cysteine protease ATG4B isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRZ9, A0A8C0PRI8, A0A8I3PPE0
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  4. XM_038574462.1 → XP_038430390.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006607.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    51712749..51737119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022410043.2 → XP_022265751.1  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54

  2. XM_038458168.1 → XP_038314096.1  cysteine protease ATG4B isoform X2

    UniProtKB/TrEMBL
    A0A8C0LN73
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_038458167.1 → XP_038314095.1  cysteine protease ATG4B isoform X1

    UniProtKB/TrEMBL
    A0A8C0LRZ9, A0A8C0PRI8, A0A8I3PPE0
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  4. XM_005635997.3 → XP_005636054.2  cysteine protease ATG4B isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:1 → 261
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
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