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ANKRD13A ankyrin repeat domain 13A [ Canis lupus familiaris (dog) ]

Gene ID: 609384, updated on 17-Aug-2024

Summary

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Official Symbol
ANKRD13Aprovided by VGNC
Official Full Name
ankyrin repeat domain 13Aprovided by VGNC
Primary source
VGNC:VGNC:37884
See related
Ensembl:ENSCAFG00845020714
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ANKRD13A in Genome Data Viewer
Location:
chromosome: 26
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (17479956..17512486, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (18634213..18666708)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (17487197..17519707, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (18843776..18876267)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (17469736..17502237, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111092656 Neighboring gene uncharacterized LOC102152728 Neighboring gene U4 spliceosomal RNA Neighboring gene GIT ArfGAP 2 Neighboring gene trichoplein keratin filament binding

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 13A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    17479956..17512486 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038436957.1 → XP_038292885.1  ankyrin repeat domain-containing protein 13A isoform X1

    UniProtKB/TrEMBL
    A0A8C0P917
    Conserved Domains (3) summary
    sd00045
    Location:12 → 38
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:156 → 475
    GPCR_chapero_1; GPCR-chaperone
    pfam12796
    Location:13 → 96
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_038436958.1 → XP_038292886.1  ankyrin repeat domain-containing protein 13A isoform X2

    UniProtKB/TrEMBL
    A0A8C0P917, A0A8I3P8Q8
    Related
    ENSCAFP00845028576.1, ENSCAFT00845036517.1
    Conserved Domains (3) summary
    sd00045
    Location:12 → 38
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:156 → 470
    GPCR_chapero_1; GPCR-chaperone
    pfam12796
    Location:13 → 96
    Ank_2; Ankyrin repeats (3 copies)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    18843776..18876267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038511940.1 → XP_038367868.1  ankyrin repeat domain-containing protein 13A isoform X5

  2. XM_038511938.1 → XP_038367866.1  ankyrin repeat domain-containing protein 13A isoform X3

  3. XM_038511939.1 → XP_038367867.1  ankyrin repeat domain-containing protein 13A isoform X4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    17469736..17502237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038639550.1 → XP_038495478.1  ankyrin repeat domain-containing protein 13A isoform X1

  2. XM_038639551.1 → XP_038495479.1  ankyrin repeat domain-containing protein 13A isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    17487197..17519707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575365.1 → XP_038431293.1  ankyrin repeat domain-containing protein 13A isoform X1

    UniProtKB/TrEMBL
    A0A8C0P917
    Conserved Domains (3) summary
    sd00045
    Location:12 → 38
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:156 → 475
    GPCR_chapero_1; GPCR-chaperone
    pfam12796
    Location:13 → 96
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_038575366.1 → XP_038431294.1  ankyrin repeat domain-containing protein 13A isoform X2

    UniProtKB/TrEMBL
    A0A8C0P917, A0A8I3P8Q8
    Conserved Domains (3) summary
    sd00045
    Location:12 → 38
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:156 → 470
    GPCR_chapero_1; GPCR-chaperone
    pfam12796
    Location:13 → 96
    Ank_2; Ankyrin repeats (3 copies)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    18634213..18666708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022410306.2 → XP_022266014.1  ankyrin repeat domain-containing protein 13A isoform X1

    UniProtKB/TrEMBL
    A0A8C0P917
    Conserved Domains (3) summary
    cd00204
    Location:4 → 101
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:8 → 38
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:156 → 475
    GPCR_chapero_1; GPCR-chaperone

  2. XM_846379.5 → XP_851472.1  ankyrin repeat domain-containing protein 13A isoform X2

    UniProtKB/TrEMBL
    A0A8C0L855, A0A8C0P5K6, A0A8C0P917, A0A8P0NCV8
    Conserved Domains (3) summary
    cd00204
    Location:4 → 101
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:8 → 38
    ANK; ANK repeat [structural motif]
    pfam11904
    Location:156 → 470
    GPCR_chapero_1; GPCR-chaperone
Nucleotide Protein
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