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ECM1 extracellular matrix protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 608791, updated on 5-Mar-2024

Summary

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Gene symbol
ECM1
Gene description
extracellular matrix protein 1
See related
Ensembl:ENSCAFG00845018089
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ECM1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (60711672..60717511)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (59142307..59148147)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (60353552..60359392)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (59542109..59547950)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (59625886..59631725)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene uncharacterized LOC111090718 Neighboring gene uncharacterized LOC119863989 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC119863990 Neighboring gene ADAMTS like 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of bone mineralization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: extracellular matrix protein 1; extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    60711672..60717511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038423067.1 → XP_038278995.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

    UniProtKB/TrEMBL
    A0A8P0NZY6
    Related
    ENSCAFP00845025288.1, ENSCAFT00845032349.1
    Conserved Domains (1) summary
    pfam05782
    Location:5 → 543
    ECM1; Extracellular matrix protein 1 (ECM1)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    59542109..59547950
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499564.1 → XP_038355492.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    59625886..59631725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038626231.1 → XP_038482159.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

    Conserved Domains (1) summary
    pfam05782
    Location:5 → 543
    ECM1; Extracellular matrix protein 1 (ECM1)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    60353552..60359392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038562134.1 → XP_038418062.1  LOW QUALITY PROTEIN: extracellular matrix protein 1

    UniProtKB/TrEMBL
    A0A8P0NZY6
    Conserved Domains (1) summary
    pfam05782
    Location:5 → 543
    ECM1; Extracellular matrix protein 1 (ECM1)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    59142307..59148147
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_845921.6 → XP_851014.2  LOW QUALITY PROTEIN: extracellular matrix protein 1

    UniProtKB/TrEMBL
    A0A8P0NZY6
    Conserved Domains (1) summary
    pfam05782
    Location:5 → 543
    ECM1; Extracellular matrix protein 1 (ECM1)
Nucleotide Protein
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