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TAMALIN trafficking regulator and scaffold protein tamalin [ Canis lupus familiaris (dog) ]

Gene ID: 608273, updated on 5-Mar-2024

Summary

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Gene symbol
TAMALIN
Gene description
trafficking regulator and scaffold protein tamalin
See related
Ensembl:ENSCAFG00845027316
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
GRASP
Orthologs
human mouse all
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Genomic context

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See TAMALIN in Genome Data Viewer
Location:
chromosome: 27
Exon count:
9
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (2991005..2998190, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (43255149..43262297)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (43653334..43660493)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (3007624..3014858, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (2994165..3001323, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene autophagy related 101 Neighboring gene nuclear receptor subfamily 4 group A member 1 Neighboring gene activin A receptor type 1B Neighboring gene uncharacterized LOC119866360 Neighboring gene activin A receptor like type 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein TAMALIN; protein TAMALIN
Names
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein
general receptor for phosphoinositides 1 associated scaffold protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    2991005..2998190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038438124.1 → XP_038294052.1  protein TAMALIN isoform X1

    UniProtKB/TrEMBL
    A0A8C0P408, A0A8I3Q151, A0A8P0TPP3
    Related
    ENSCAFP00845037753.1, ENSCAFT00845048123.1
    Conserved Domains (1) summary
    cd00992
    Location:102 → 187
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_038438125.1 → XP_038294053.1  protein TAMALIN isoform X2

    Conserved Domains (1) summary
    cd00992
    Location:9 → 42
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    3007624..3014858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512819.1 → XP_038368747.1  protein TAMALIN isoform X1

    Conserved Domains (1) summary
    cd00992
    Location:102 → 187
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_038512820.1 → XP_038368748.1  protein TAMALIN isoform X2

    Conserved Domains (1) summary
    cd00992
    Location:9 → 42
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    2994165..3001323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640581.1 → XP_038496509.1  LOW QUALITY PROTEIN: protein TAMALIN isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    43653334..43660493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038577723.1 → XP_038433651.1  LOW QUALITY PROTEIN: protein TAMALIN isoform X1

    UniProtKB/TrEMBL
    A0A8C0P408

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    43255149..43262297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038460132.1 → XP_038316060.1  protein TAMALIN isoform X1

    UniProtKB/TrEMBL
    A0A8C0P408, A0A8I3Q151, A0A8P0TPP3
    Conserved Domains (1) summary
    cd00992
    Location:102 → 187
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_038460133.1 → XP_038316061.1  protein TAMALIN isoform X2

    Conserved Domains (1) summary
    cd00992
    Location:9 → 42
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
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