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TANK TRAF family member associated NFKB activator [ Canis lupus familiaris (dog) ]

Gene ID: 608092, updated on 17-Aug-2024

Summary

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Official Symbol
TANKprovided by VGNC
Official Full Name
TRAF family member associated NFKB activatorprovided by VGNC
Primary source
VGNC:VGNC:47101
See related
Ensembl:ENSCAFG00845029606
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TANK in Genome Data Viewer
Location:
chromosome: 36
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 36 NC_051840.1 (6855580..6949743)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 36 NC_006618.4 (6869111..6962895)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 36 NC_049257.1 (7023842..7118152)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 36 NC_049296.1 (6871470..6966109)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 36 NC_049777.1 (6916601..7010763)

Chromosome 36 - NC_051840.1Genomic Context describing neighboring genes Neighboring gene actin, cytoplasmic 1-like Neighboring gene uncharacterized LOC111094257 Neighboring gene uncharacterized LOC111094188 Neighboring gene mago-nashi homolog B (Drosophila) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRAF family member-associated NF-kappa-B activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051840.1 Reference ROS_Cfam_1.0

    Range
    6855580..6949743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446882.1 → XP_038302810.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q1Y2
    Related
    ENSCAFP00845041138.1, ENSCAFT00845052436.1
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  2. XM_038446883.1 → XP_038302811.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q1Y2
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  3. XM_038446881.1 → XP_038302809.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q1Y2
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  4. XM_038446884.1 → XP_038302812.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8I3Q1Y2
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  5. XM_038446885.1 → XP_038302813.1  TRAF family member-associated NF-kappa-B activator isoform X3

    UniProtKB/TrEMBL
    A0A8I3Q1Y2
    Conserved Domains (1) summary
    pfam12845
    Location:132 → 185
    TBD; TBD domain

  6. XM_038446880.1 → XP_038302808.1  TRAF family member-associated NF-kappa-B activator isoform X1

    UniProtKB/TrEMBL
    A0A8I3Q1Y2
    Conserved Domains (1) summary
    pfam12845
    Location:139 → 192
    TBD; TBD domain

RNA

  1. XR_005307691.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049296.1 Alternate UMICH_Zoey_3.1

    Range
    6871470..6966109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038520956.1 → XP_038376884.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  2. XM_038520958.1 → XP_038376886.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  3. XM_038520955.1 → XP_038376883.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  4. XM_038520959.1 → XP_038376887.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  5. XM_038520960.1 → XP_038376888.1  TRAF family member-associated NF-kappa-B activator isoform X3

    Conserved Domains (1) summary
    pfam12845
    Location:132 → 185
    TBD; TBD domain

  6. XM_038520954.1 → XP_038376882.1  TRAF family member-associated NF-kappa-B activator isoform X1

RNA

  1. XR_005350685.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049777.1 Alternate UNSW_CanFamBas_1.0

    Range
    6916601..7010763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038649069.1 → XP_038504997.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  2. XM_038649070.1 → XP_038504998.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  3. XM_038649068.1 → XP_038504996.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  4. XM_038649071.1 → XP_038504999.1  TRAF family member-associated NF-kappa-B activator isoform X2

    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  5. XM_038649072.1 → XP_038505000.1  TRAF family member-associated NF-kappa-B activator isoform X3

    Conserved Domains (1) summary
    pfam12845
    Location:132 → 185
    TBD; TBD domain

  6. XM_038649073.1 → XP_038505001.1  TRAF family member-associated NF-kappa-B activator isoform X4

RNA

  1. XR_005418311.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049257.1 Alternate UU_Cfam_GSD_1.0

    Range
    7023842..7118152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584648.1 → XP_038440576.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  2. XM_038584649.1 → XP_038440577.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  3. XM_038584647.1 → XP_038440575.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  4. XM_038584650.1 → XP_038440578.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  5. XM_038584651.1 → XP_038440579.1  TRAF family member-associated NF-kappa-B activator isoform X3

    UniProtKB/TrEMBL
    A0A8C0JZ81, A0A8C0N7H9, A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:132 → 185
    TBD; TBD domain

  6. XM_038584646.1 → XP_038440574.1  TRAF family member-associated NF-kappa-B activator isoform X1

    UniProtKB/TrEMBL
    A0A8P0NCA8

RNA

  1. XR_005384597.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006618.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    6869111..6962895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005640245.4 → XP_005640302.1  TRAF family member-associated NF-kappa-B activator isoform X2

    See identical proteins and their annotated locations for XP_005640302.1

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  2. XM_005640247.4 → XP_005640304.1  TRAF family member-associated NF-kappa-B activator isoform X2

    See identical proteins and their annotated locations for XP_005640304.1

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  3. XM_005640244.4 → XP_005640301.1  TRAF family member-associated NF-kappa-B activator isoform X2

    See identical proteins and their annotated locations for XP_005640301.1

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  4. XM_038463300.1 → XP_038319228.1  TRAF family member-associated NF-kappa-B activator isoform X2

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:133 → 186
    TBD; TBD domain

  5. XM_022414924.2 → XP_022270632.1  TRAF family member-associated NF-kappa-B activator isoform X3

    UniProtKB/TrEMBL
    A0A8C0JZ81, A0A8C0N7H9, A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:132 → 185
    TBD; TBD domain

  6. XM_005640243.4 → XP_005640300.1  TRAF family member-associated NF-kappa-B activator isoform X1

    UniProtKB/TrEMBL
    A0A8P0NCA8
    Conserved Domains (1) summary
    pfam12845
    Location:142 → 193
    TBD; TBD domain

RNA

  1. XR_001315353.3 RNA Sequence

Nucleotide Protein
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