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SNORD13P2 small nucleolar RNA, C/D box 13 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 6077, updated on 17-Sep-2024

Summary

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Official Symbol
SNORD13P2provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 13 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:10111
See related
AllianceGenome:HGNC:10111
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U13; RNU13P2; U13.12A
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Genomic context

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See SNORD13P2 in Genome Data Viewer
Location:
7p22.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (4689429..4689633)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (4806628..4806832)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (4729060..4729264)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375133 Neighboring gene MPRA-validated peak6348 silencer Neighboring gene endogenous retrovirus group K member 6 Env polyprotein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4643917-4644418 Neighboring gene Sharpr-MPRA regulatory region 9979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17894 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17895 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17896 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17897 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:4704492-4704666 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:4720927-4721427 Neighboring gene Sharpr-MPRA regulatory region 11841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4722783-4723310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4739232-4739732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4742083-4742842 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4744443-4745084 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4745727-4746368 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4746369-4747010 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4747011-4747652 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4747653-4748294 Neighboring gene forkhead box K1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4748937-4749577 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4750899-4751431 Neighboring gene uncharacterized LOC124901581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4763724-4764310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25560 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4776642-4777196 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:4777977-4779176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4779416-4779969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4779970-4780524 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25561 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17900 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17901 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4789475-4789974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:4793383-4793937 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:4800052-4801251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4813996-4814672 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:4814673-4815349 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25566 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25567 Neighboring gene adaptor related protein complex 5 subunit zeta 1 Neighboring gene microRNA 4656

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Three pseudogenes for human U13 snRNA belong to class III. Baserga SJ, et al. Gene, 1991 Nov 15. PMID 1748306
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • RNA, U13 small nuclear pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008260.1 

    Range
    101..305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    4689429..4689633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    4806628..4806832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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