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CHRAC1 chromatin accessibility complex subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 607681, updated on 17-Aug-2024

Summary

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Official Symbol
CHRAC1provided by VGNC
Official Full Name
chromatin accessibility complex subunit 1provided by VGNC
Primary source
VGNC:VGNC:51767
See related
Ensembl:ENSCAFG00845012136
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CHRAC1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 13 NC_051817.1 (35545762..35563889)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 13 NC_006595.4 (35020252..35038381)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 13 NC_049234.1 (35775896..35794033)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 13 NC_049273.1 (35266152..35284293)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 13 NC_049754.1 (35356128..35374272)

Chromosome 13 - NC_051817.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 9 Neighboring gene tropomyosin alpha-3 chain-like Neighboring gene uncharacterized LOC111098573 Neighboring gene uncharacterized LOC111098574 Neighboring gene argonaute RISC catalytic component 2 Neighboring gene uncharacterized LOC111098575

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CHRAC IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromatin accessibility complex protein 1
Names
chromatin accessibility complex 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051817.1 Reference ROS_Cfam_1.0

    Range
    35545762..35563889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038685120.1 → XP_038541048.1  chromatin accessibility complex protein 1 isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038685121.1 → XP_038541049.1  chromatin accessibility complex protein 1 isoform X3

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038685119.1 → XP_038541047.1  chromatin accessibility complex protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KJZ7, A0A8I3NBL3
    Related
    ENSCAFP00845016952.1, ENSCAFT00845021571.1
    Conserved Domains (1) summary
    COG5208
    Location:15 → 97
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049273.1 Alternate UMICH_Zoey_3.1

    Range
    35266152..35284293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038493361.1 → XP_038349289.1  chromatin accessibility complex protein 1 isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038493362.1 → XP_038349290.1  chromatin accessibility complex protein 1 isoform X3

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038493360.1 → XP_038349288.1  chromatin accessibility complex protein 1 isoform X1

    Conserved Domains (1) summary
    COG5208
    Location:15 → 97
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049754.1 Alternate UNSW_CanFamBas_1.0

    Range
    35356128..35374272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038619513.1 → XP_038475441.1  chromatin accessibility complex protein 1 isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038619514.1 → XP_038475442.1  chromatin accessibility complex protein 1 isoform X3

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038619512.1 → XP_038475440.1  chromatin accessibility complex protein 1 isoform X1

    Conserved Domains (1) summary
    COG5208
    Location:15 → 97
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049234.1 Alternate UU_Cfam_GSD_1.0

    Range
    35775896..35794033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038555610.1 → XP_038411538.1  chromatin accessibility complex protein 1 isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038555611.1 → XP_038411539.1  chromatin accessibility complex protein 1 isoform X3

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038555609.1 → XP_038411537.1  chromatin accessibility complex protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KJZ7, A0A8C0QFA0, A0A8P0SSR7
    Conserved Domains (1) summary
    COG5208
    Location:15 → 97
    HAP5; CCAAT-binding factor, subunit C [Transcription]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006595.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35020252..35038381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429076.1 → XP_038285004.1  chromatin accessibility complex protein 1 isoform X2

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_038429086.1 → XP_038285014.1  chromatin accessibility complex protein 1 isoform X3

    Conserved Domains (1) summary
    COG5208
    Location:15 → 90
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_038429066.1 → XP_038284994.1  chromatin accessibility complex protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KJZ7, A0A8C0QFA0, A0A8P0SSR7
    Conserved Domains (1) summary
    COG5208
    Location:15 → 97
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
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