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nitr1k novel immune-type receptor 1k [ Danio rerio (zebrafish) ]

Gene ID: 60646, updated on 2-Nov-2024

Summary

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Official Symbol
nitr1kprovided by ZNC
Official Full Name
novel immune-type receptor 1kprovided by ZNC
Primary source
ZFIN:ZDB-GENE-001106-5
See related
AllianceGenome:ZFIN:ZDB-GENE-001106-5
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
nitr1; nitr2; nitr1.3; nitr1.12; nitr1.26; nitr1.40; nitr1k_3; nitr1k_4
Summary
Predicted to be involved in response to bacterium. Predicted to be located in plasma membrane. Orthologous to human SIRPB2 (signal regulatory protein beta 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See nitr1k in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (17496474..17522126)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (17242238..17284593)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene novel immune-type receptor 3d Neighboring gene si:busm1-186f8.13, pseudogene Neighboring gene si:busm1-219h16.18, pseudogene Neighboring gene novel immune-type receptor 1f Neighboring gene uncharacterized LOC137487204 Neighboring gene novel immune-type receptor 1h

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of the zebrafish model: from development to immunity and infectious disease. Phelps HA, et al. Zebrafish, 2005. PMID 18248169
  2. Developmental and tissue-specific expression of NITRs. Yoder JA, et al. Immunogenetics, 2010 Feb. PMID 20012603, Free PMC Article
  3. The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains. Desai S, et al. BMC Evol Biol, 2008 Jun 19. PMID 18565225, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in response to bacterium IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LOW QUALITY PROTEIN: uncharacterized protein nitr1k; novel immune-type receptor 1k
Names
immune-type receptor
novel immune-type receptor 1
novel immune-type receptor 1.12
novel immune-type receptor 1.26
novel immune-type receptor 1.3
novel immune-type receptor 2
putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    17496474..17522126
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068222431.1 → XP_068078532.1  LOW QUALITY PROTEIN: uncharacterized protein nitr1k

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198348.3: Suppressed sequence

    Description
    NM_198348.3: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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