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IDH1 NADP-dependent isocitrate dehydrogenase [ Glycine max (soybean) ]

Gene ID: 606295, updated on 7-Dec-2023

Summary

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Gene symbol
IDH1
Gene description
NADP-dependent isocitrate dehydrogenase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See IDH1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (12504625..12510270, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (12423526..12429176, complement)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g50390, chloroplastic Neighboring gene serine/threonine-protein kinase RHS3 Neighboring gene uncharacterized LOC100784835 Neighboring gene ABC transporter D family member 2, chloroplastic Neighboring gene seed maturation protein PM41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Distribution of two isoforms of NADP-dependent isocitrate dehydrogenase in soybean (Glycine max). Park KS, et al. Plant Mol Biol, 1999 May. PMID 10394941
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NADP-dependent isocitrate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001249274.2 → NP_001236203.2  NADP-dependent isocitrate dehydrogenase

    Status: VALIDATED

    Source sequence(s)
    ACUP04002819
    UniProtKB/TrEMBL
    C6TGV2, O82585
    Conserved Domains (1) summary
    PLN00103
    Location:1 → 410
    PLN00103; isocitrate dehydrogenase (NADP+); Provisional

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    12504625..12510270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014778381.3 → XP_014633867.1  NADP-dependent isocitrate dehydrogenase isoform X1

    UniProtKB/TrEMBL
    C6TGV2, O82585
    Conserved Domains (1) summary
    cl00445
    Location:1 → 366
    Iso_dh; Isocitrate/isopropylmalate dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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