U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CC1G_10837 splicing factor 3b subunit 4 [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6010272, updated on 17-May-2024

Summary

Go to the top of the page Help
Gene symbol
CC1G_10837
Gene description
splicing factor 3b subunit 4
Locus tag
CC1G_10837
See related
FungiDB:CC1G_10837; VEuPathDB:CC1G_10837
Gene type
protein coding
RNA name
splicing factor 3b subunit 4
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CC1G_10837 in Genome Data Viewer
Location:
chromosome: 2, map: unlocalized
Exon count:
5

NW_003307543.1Genomic Context describing neighboring genes Neighboring gene amidohydrolase Neighboring gene endoplasmic reticulum protein Neighboring gene GTP binding protein Cdc42 Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_003307543.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
splicing factor 3b subunit 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307543.1 Reference assembly

    Range
    2728521..2729759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001833720.2 → XP_001833772.2  splicing factor 3b subunit 4 [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_001833772.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8NHJ0
    Conserved Domains (2) summary
    cd12334
    Location:14 → 87
    RRM1_SF3B4; RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
    cd12335
    Location:98 → 180
    RRM2_SF3B4; RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials