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CC1G_03878 cap-binding protein CPB20 [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6010159, updated on 17-May-2024

Summary

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Gene symbol
CC1G_03878
Gene description
cap-binding protein CPB20
Locus tag
CC1G_03878
See related
FungiDB:CC1G_03878; VEuPathDB:CC1G_03878
Gene type
protein coding
RNA name
cap-binding protein CPB20
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_03878 in Genome Data Viewer
Location:
chromosome: 2, map: unlocalized
Exon count:
3

NW_003307543.1Genomic Context describing neighboring genes Neighboring gene protein kinase subdomain-containing protein PKL/CAK/Fmp29 Neighboring gene Rpt3-PA Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307543.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cap-binding protein CPB20

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307543.1 Reference assembly

    Range
    2466686..2467506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001833609.2 → XP_001833661.2  cap-binding protein CPB20 [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_001833661.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8NH24
    Conserved Domains (2) summary
    COG0724
    Location:1 → 60
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl17169
    Location:1 → 49
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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