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CC1G_09032 rRNA primary transcript binding protein [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6007974, updated on 17-May-2024

Summary

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Gene symbol
CC1G_09032
Gene description
rRNA primary transcript binding protein
Locus tag
CC1G_09032
See related
FungiDB:CC1G_09032; VEuPathDB:CC1G_09032
Gene type
protein coding
RNA name
rRNA primary transcript binding protein
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_09032 in Genome Data Viewer
Location:
chromosome: 7, map: unlocalized
Exon count:
5

NW_003307538.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene mitochondrial fission 1 protein Neighboring gene amidase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307538.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly-pyrimidine tract binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2AF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
rRNA primary transcript binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307538.1 Reference assembly

    Range
    1770667..1772942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001831451.2 → XP_001831503.2  rRNA primary transcript binding protein [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_001831503.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8N9J7
    Conserved Domains (1) summary
    TIGR01642
    Location:126 → 526
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
Nucleotide Protein
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