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CC1G_04531 pre-mRNA-splicing factor rse1 [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6006536, updated on 17-May-2024

Summary

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Gene symbol
CC1G_04531
Gene description
pre-mRNA-splicing factor rse1
Locus tag
CC1G_04531
See related
FungiDB:CC1G_04531; VEuPathDB:CC1G_04531
Gene type
protein coding
RNA name
pre-mRNA-splicing factor rse1
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_04531 in Genome Data Viewer
Location:
chromosome: 3, map: unlocalized
Exon count:
12

NW_003307542.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II subunit Neighboring gene epoxide hydrolase domain-containing protein Neighboring gene pre-mRNA-splicing factor SLU7 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307542.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U2 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
pre-mRNA-splicing factor rse1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307542.1 Reference assembly

    Range
    1066068..1070291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001830046.2 → XP_001830098.2  pre-mRNA-splicing factor rse1 [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_001830098.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8N5F3
    Conserved Domains (2) summary
    pfam03178
    Location:849 → 1169
    CPSF_A; CPSF A subunit region
    pfam10433
    Location:76 → 594
    MMS1_N; Mono-functional DNA-alkylating methyl methanesulfonate N-term
Nucleotide Protein
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