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AO090038000552 hypothetical protein [ Aspergillus oryzae RIB40 ]

Gene ID: 5997550, updated on 10-Oct-2024

Summary

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Gene symbol
AO090038000552
Gene description
hypothetical protein
Locus tag
AO090038000552
See related
FungiDB:AO090038000552; VEuPathDB:AO090038000552
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus oryzae RIB40 (strain: RIB40)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
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Genomic context

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See AO090038000552 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Sequence:
Chromosome: 6; NC_036440.1 (2161514..2163203)

Chromosome 6 - NC_036440.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036440.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and analysis of Aspergillus oryzae. Machida M, et al. Nature, 2005 Dec 22. PMID 16372010
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein
XP_001825455.1
  • predicted protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_036440.1 Reference assembly

    Range
    2161514..2163203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001825403.1 → XP_001825455.1  unnamed protein product [Aspergillus oryzae RIB40]

    See identical proteins and their annotated locations for XP_001825455.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q2U293
    UniProtKB/TrEMBL
    A0AAN4Z195
    Conserved Domains (2) summary
    pfam12708
    Location:41 → 267
    Pectate_lyase_3; Pectate lyase superfamily protein
    cl19188
    Location:41 → 372
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2U293.1

Gene LinkOut

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Molecular Biology Databases
Research Materials