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AO090003000042 hypothetical protein [ Aspergillus oryzae RIB40 ]

Gene ID: 5991265, updated on 31-Oct-2024

Summary

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Gene symbol
AO090003000042
Gene description
hypothetical protein
Locus tag
AO090003000042
See related
FungiDB:AO090003000042; VEuPathDB:AO090003000042
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Aspergillus oryzae RIB40 (strain: RIB40)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati
Orthologs
Aspergillus fumigatus all
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Genomic context

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See AO090003000042 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_036436.1 (2200157..2203265, complement)

Chromosome 2 - NC_036436.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_036436.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and analysis of Aspergillus oryzae. Machida M, et al. Nature, 2005 Dec 22. PMID 16372010
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein
XP_001819282.1
  • beta-galactosidase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_036436.1 Reference assembly

    Range
    2200157..2203265 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001819230.1 → XP_001819282.1  unnamed protein product [Aspergillus oryzae RIB40]

    See identical proteins and their annotated locations for XP_001819282.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q2UMD5
    UniProtKB/TrEMBL
    A0A1S9DP05, I8TFK8
    Conserved Domains (4) summary
    pfam10435
    Location:383 → 558
    BetaGal_dom2; Beta-galactosidase, domain 2
    pfam13363
    Location:569 → 636
    BetaGal_dom3; Beta-galactosidase, domain 3
    pfam13364
    Location:834 → 944
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
    cl07893
    Location:38 → 374
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2UMD5.1

Gene LinkOut

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Molecular Biology Databases
Research Materials