U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

snapc5.S small nuclear RNA activating complex polypeptide 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 594874, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
snapc5.S
Official Full Name
small nuclear RNA activating complex polypeptide 5 S homeolog
Primary source
Xenbase:XB-GENE-6251970
Locus tag
XELAEV_180204271mg
See related
AllianceGenome:Xenbase:XB-GENE-6251970
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
snap19; snapc5; snapc5a; snapc5-a; snapc5-b
Summary
Predicted to act upstream of or within transcription by RNA polymerase II and transcription initiation at RNA polymerase III promoter. Predicted to be located in nucleus. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See snapc5.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (37011147..37017246)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (35829190..35835326)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L4 S homeolog Neighboring gene small nucleolar RNA SNORD18 Neighboring gene small nucleolar RNA SNORD18 Neighboring gene mitogen-activated protein kinase kinase 1 S homeolog Neighboring gene timeless interacting protein S homeolog Neighboring gene small Cajal body-specific RNA 14

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
small nuclear RNA activating complex, polypeptide 5 a
Names
small nuclear RNA activating complex, polypeptide 5 a, 19kDa
small nuclear RNA activating complex, polypeptide 5, 19kDa

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095585.1 → NP_001089054.1  small nuclear RNA activating complex, polypeptide 5 a

    See identical proteins and their annotated locations for NP_001089054.1

    Status: PROVISIONAL

    Source sequence(s)
    BC089087
    UniProtKB/TrEMBL
    Q5HZB9
    Conserved Domains (1) summary
    pfam15497
    Location:8 → 92
    SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    37011147..37017246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.