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LOC589456 zeta-sarcoglycan [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 589456, updated on 14-Dec-2023

Summary

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Gene symbol
LOC589456
Gene description
zeta-sarcoglycan
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC589456 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145596.1 (12961194..12999282, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577083.1 (864603..900415, complement)

NW_022145596.1Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain-containing protein 6 Neighboring gene major facilitator superfamily domain-containing protein 6 Neighboring gene tumor suppressor candidate 3 Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145596.1 Reference Spur_5.0 Primary Assembly

    Range
    12961194..12999282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011666747.2 → XP_011665049.1  zeta-sarcoglycan

    See identical proteins and their annotated locations for XP_011665049.1

    UniProtKB/TrEMBL
    A0A7M7NH51
    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_030980678.1 → XP_030836538.1  zeta-sarcoglycan

    UniProtKB/TrEMBL
    A0A7M7NH51
    Conserved Domains (1) summary
    pfam04790
    Location:38 → 291
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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