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LOC588724 ATP-binding cassette sub-family A member 5 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 588724, updated on 14-Dec-2023

Summary

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Gene symbol
LOC588724
Gene description
ATP-binding cassette sub-family A member 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC588724 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145599.1 (31607030..31638511)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003580003.1 (9253..35809, complement)

NW_022145599.1Genomic Context describing neighboring genes Neighboring gene mucin-5AC-like Neighboring gene uncharacterized LOC594376 Neighboring gene short-chain dehydrogenase/reductase family 42E member 1 Neighboring gene proline-, glutamic acid- and leucine-rich protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family A member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145599.1 Reference Spur_5.0 Primary Assembly

    Range
    31607030..31638511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030984739.1 → XP_030840599.1  ATP-binding cassette sub-family A member 5 isoform X1

    UniProtKB/TrEMBL
    A0A7M7NU41
    Conserved Domains (1) summary
    TIGR01257
    Location:16 → 1508
    rim_protein; retinal-specific rim ABC transporter

  2. XM_030984741.1 → XP_030840601.1  ATP-binding cassette sub-family A member 5 isoform X3

    UniProtKB/TrEMBL
    A0A7M7SYG2

  3. XM_030984740.1 → XP_030840600.1  ATP-binding cassette sub-family A member 5 isoform X2

    UniProtKB/TrEMBL
    A0A7M7NWZ6
    Conserved Domains (1) summary
    TIGR01257
    Location:16 → 1504
    rim_protein; retinal-specific rim ABC transporter

  4. XM_030984742.1 → XP_030840602.1  ATP-binding cassette sub-family A member 5 isoform X4

    UniProtKB/TrEMBL
    A0A7M7NRW7
    Conserved Domains (1) summary
    TIGR01257
    Location:16 → 1491
    rim_protein; retinal-specific rim ABC transporter

  5. XM_030984743.1 → XP_030840603.1  ATP-binding cassette sub-family A member 5 isoform X5

    UniProtKB/TrEMBL
    A0A7M7SYH8
    Conserved Domains (1) summary
    TIGR01257
    Location:16 → 1467
    rim_protein; retinal-specific rim ABC transporter
Nucleotide Protein
Heading Accession and Version

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