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ush2a usherin [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 588674, updated on 17-Aug-2024

Summary

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Symbol
ush2a
Full Name
usherin
Primary source
EchinoBase:ECB-GENE-23145997
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See ush2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
65
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145611.1 (2665215..2744645)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577124.1 (325584..421124, complement)

NW_022145611.1Genomic Context describing neighboring genes Neighboring gene Bardet-Biedl syndrome 1 Neighboring gene uncharacterized LOC100888704 Neighboring gene atlastin-2-like Neighboring gene atlastin-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
usherin
Names
Usher syndrome 2A (autosomal recessive, mild)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145611.1 Reference Spur_5.0 Primary Assembly

    Range
    2665215..2744645
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030998441.1 → XP_030854301.1  usherin

    UniProtKB/TrEMBL
    A0A7M7PNC5
    Conserved Domains (9) summary
    smart00060
    Location:1356 → 1444
    FN3; Fibronectin type 3 domain
    smart00180
    Location:733 → 778
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:832 → 884
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:2436 → 2529
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:1512 → 1679
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:3967 → 4052
    fn3; Fibronectin type III domain
    pfam00053
    Location:996 → 1044
    Laminin_EGF; Laminin EGF domain
    pfam13385
    Location:138 → 276
    Laminin_G_3; Concanavalin A-like lectin/glucanases superfamily
    cl02806
    Location:308 → 500
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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