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smpB SsrA-binding protein SmpB [ Wohlfahrtiimonas chitiniclastica ]

Gene ID: 58264463, updated on 10-May-2024

Summary

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Gene symbol
smpB
Gene description
SsrA-binding protein SmpB
Locus tag
B9T10_RS08955
Gene type
protein coding
Organism
Wohlfahrtiimonas chitiniclastica (strain: ATCC 51249, nat-host: Homo sapiens, culture-collection: ATCC:51249)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Cardiobacteriales; Ignatzschineriaceae; Wohlfahrtiimonas
Old locus tag
B9T10_08955
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Genomic context

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NZ_NEFL01000003.1Genomic Context describing neighboring genes Neighboring gene DsrE family protein Neighboring gene TetR/AcrR family transcriptional regulator Neighboring gene YajD family HNH nuclease Neighboring gene tRNA-Arg

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_NEFL01000003.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB. Hong SJ, et al. Mol Microbiol, 2005 Jul. PMID 15978085, Free PMC Article
  2. Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation. Metzinger L, et al. Nucleic Acids Res, 2005. PMID 15860775, Free PMC Article
  3. Comparative 3-D modeling of tmRNA. Burks J, et al. BMC Mol Biol, 2005 Jun 15. PMID 15958166, Free PMC Article
  4. A previously uncharacterized role for small protein B (SmpB) in transfer messenger RNA-mediated trans-translation. Sundermeier TR, et al. Proc Natl Acad Sci U S A, 2005 Feb 15. PMID 15699355, Free PMC Article
  5. Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA. Ivanova N, et al. Nucleic Acids Res, 2005. PMID 15972795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
SsrA-binding protein SmpB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_NEFL01000003.1 Reference assembly

    Range
    271748..272224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_008315400.1 SsrA-binding protein SmpB [Wohlfahrtiimonas chitiniclastica]

    See identical proteins and their annotated locations for WP_008315400.1

    UniProtKB/TrEMBL
    A0A162UMT9, A0A256CJX4, L8XZK6
    Conserved Domains (1) summary
    PRK05422
    Location:13 → 155
    smpB; SsrA-binding protein SmpB
Nucleotide Protein
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