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Dexi dexamethasone-induced transcript [ Mus musculus (house mouse) ]

Gene ID: 58239, updated on 17-Aug-2024

Summary

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Official Symbol
Dexiprovided by MGI
Official Full Name
dexamethasone-induced transcriptprovided by MGI
Primary source
MGI:MGI:1926236
See related
Ensembl:ENSMUSG00000038055 AllianceGenome:MGI:1926236
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Myle; D16Bwg0586e; 1810029J14Rik
Summary
Is expressed in embryo. Orthologous to human DEXI (Dexi homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 13.7), thymus adult (RPKM 11.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Dexi in Genome Data Viewer
Location:
16 A1; 16 5.67 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10348071..10360918, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10530207..10543054, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:10469529-10469712 Neighboring gene STARR-seq mESC enhancer starr_40087 Neighboring gene predicted gene, 41420 Neighboring gene STARR-positive B cell enhancer mm9_chr16:10487992-10488292 Neighboring gene class II transactivator Neighboring gene predicted gene, 57630 Neighboring gene STARR-positive B cell enhancer ABC_E5523 Neighboring gene STARR-positive B cell enhancer ABC_E10887 Neighboring gene C-type lectin domain family 16, member A Neighboring gene STARR-seq mESC enhancer starr_40088 Neighboring gene predicted gene, 52264 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:10666979-10667180 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:10668626-10668834 Neighboring gene predicted gene 15558

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The type 1 diabetes candidate gene Dexi does not affect disease risk in the nonobese diabetic mouse model. Nieves-Bonilla JM, et al. Genes Immun, 2020 Jan. PMID 31435002, Free PMC Article
  2. Cloning of dexamethasone-induced transcript: a novel glucocorticoid-induced gene that is upregulated in emphysema. Edgar AJ, et al. Am J Respir Cell Mol Biol, 2001 Jul. PMID 11472984
  3. Analysis of DEXI/Dexi refines the organization of the mouse 7C and human 15q11-->q13 imprinting clusters. Kelly M, et al. Cytogenet Cell Genet, 2001. PMID 11306815
  4. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, et al. Genome Res, 1997 Nov. PMID 9371744, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2)  1 citation
  • Gene trapped (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
dexamethasone-induced protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021428.4 → NP_067403.2  dexamethasone-induced protein

    See identical proteins and their annotated locations for NP_067403.2

    Status: VALIDATED

    Source sequence(s)
    AF152470, AK007644
    Consensus CDS
    CCDS37252.1
    UniProtKB/Swiss-Prot
    Q9WUQ7
    Related
    ENSMUSP00000047676.6, ENSMUST00000038281.6
    Conserved Domains (1) summary
    pfam15198
    Location:1 → 95
    Dexa_ind; Dexamethasone-induced

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    10348071..10360918 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9WUQ7.2 GenPept UniProtKB/Swiss-Prot:Q9WUQ7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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