U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC582389 glycoprotein 3-alpha-L-fucosyltransferase A [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 582389, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC582389
Gene description
glycoprotein 3-alpha-L-fucosyltransferase A
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC582389 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145605.1 (29464709..29469433)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577237.1 (241736..252003)

NW_022145605.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase HECTD4 Neighboring gene E3 ubiquitin-protein ligase RNF185-like Neighboring gene uncharacterized LOC763713 Neighboring gene uncharacterized LOC115926540

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glycoprotein 3-alpha-L-fucosyltransferase A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145605.1 Reference Spur_5.0 Primary Assembly

    Range
    29464709..29469433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011673803.2 → XP_011672105.2  glycoprotein 3-alpha-L-fucosyltransferase A

    UniProtKB/TrEMBL
    A0A7M7REQ9
    Conserved Domains (2) summary
    pfam00852
    Location:213 → 363
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:106 → 175
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

  2. XM_782341.5 → XP_787434.3  glycoprotein 3-alpha-L-fucosyltransferase A

    UniProtKB/TrEMBL
    A0A7M7REQ9
    Conserved Domains (2) summary
    pfam00852
    Location:213 → 363
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:106 → 175
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.