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Il20 interleukin 20 [ Mus musculus (house mouse) ]

Gene ID: 58181, updated on 11-Nov-2024

Summary

Official Symbol
Il20provided by MGI
Official Full Name
interleukin 20provided by MGI
Primary source
MGI:MGI:1890473
See related
Ensembl:ENSMUSG00000026416 AllianceGenome:MGI:1890473
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
If2d; Zcyto10
Summary
Enables cytokine activity; interleukin-20 receptor binding activity; and interleukin-22 receptor binding activity. Acts upstream of or within positive regulation of osteoclast differentiation. Located in extracellular space. Is expressed in Harderian gland; ductus deferens; epididymis; prostate gland; and skin. Human ortholog(s) of this gene implicated in psoriasis. Orthologous to human IL20 (interleukin 20). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Il20 in Genome Data Viewer
Location:
1 E4; 1 56.89 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (130834722..130839033, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (130906985..130911296, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9184 Neighboring gene STARR-positive B cell enhancer ABC_E9478 Neighboring gene Fc fragment of IgM receptor Neighboring gene interleukin 24 Neighboring gene STARR-seq mESC enhancer starr_02206 Neighboring gene interleukin 19 Neighboring gene predicted gene, 41952

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (6) 
  • Targeted (4)  1 citation

General gene information

Markers

Clone Names

  • MGC130536

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cytokine activity IDA
Inferred from Direct Assay
more info
PubMed 
enables cytokine activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables interleukin-20 receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
enables interleukin-20 receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables interleukin-22 receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
interleukin-20
Names
IL-20
cytokine Zcyto10
four alpha helix cytokine ZCYTO10
four helix bundle cytokine 10
interferon 2d

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001311091.1NP_001298020.1  interleukin-20 isoform 2

    See identical proteins and their annotated locations for NP_001298020.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AF224267, BB064801
    Consensus CDS
    CCDS78673.1
    UniProtKB/TrEMBL
    Q2THG5
    Related
    ENSMUSP00000141088.2, ENSMUST00000188581.2
    Conserved Domains (1) summary
    cl02501
    Location:58151
    IL10; Interleukin 10
  2. NM_021380.2NP_067355.1  interleukin-20 isoform 1 precursor

    See identical proteins and their annotated locations for NP_067355.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AF224267, BB064801
    Consensus CDS
    CCDS15263.1
    UniProtKB/Swiss-Prot
    Q9JKV9
    UniProtKB/TrEMBL
    Q2NKI0
    Related
    ENSMUSP00000027673.5, ENSMUST00000027673.11
    Conserved Domains (1) summary
    cl02501
    Location:39173
    IL10; Interleukin 10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    130834722..130839033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)