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LOC579940 carbohydrate sulfotransferase 15 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579940, updated on 14-Dec-2023

Summary

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Gene symbol
LOC579940
Gene description
carbohydrate sulfotransferase 15
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC579940 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145613.1 (35798857..35832548)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577495.1 (7168..11095)

NW_022145613.1Genomic Context describing neighboring genes Neighboring gene kalirin Neighboring gene carbohydrate sulfotransferase 15-like Neighboring gene carbohydrate sulfotransferase 15 Neighboring gene histamine N-methyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hexose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145613.1 Reference Spur_5.0 Primary Assembly

    Range
    35798857..35832548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030974222.1 → XP_030830082.1  carbohydrate sulfotransferase 15 isoform X1

    UniProtKB/TrEMBL
    A0A7M7N3M2
    Conserved Domains (1) summary
    cl21551
    Location:304 → 434
    Sulfotransfer_3; Sulfotransferase family

  2. XM_030974223.1 → XP_030830083.1  carbohydrate sulfotransferase 15 isoform X2

    UniProtKB/TrEMBL
    A0A7M7N4V0
    Conserved Domains (1) summary
    cl21551
    Location:275 → 405
    Sulfotransfer_3; Sulfotransferase family

  3. XM_030974224.1 → XP_030830084.1  carbohydrate sulfotransferase 15 isoform X2

    UniProtKB/TrEMBL
    A0A7M7N4V0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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