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LOC579791 polypeptide N-acetylgalactosaminyltransferase 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579791, updated on 14-Dec-2023

Summary

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Gene symbol
LOC579791
Gene description
polypeptide N-acetylgalactosaminyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145604.1 (360998..374603, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577546.1 (167751..178137, complement)

NW_022145604.1Genomic Context describing neighboring genes Neighboring gene very-long-chain 3-oxoacyl-CoA reductase-like Neighboring gene uncharacterized oxidoreductase MexAM1_META1p0182-like Neighboring gene UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase-like Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145604.1 Reference Spur_5.0 Primary Assembly

    Range
    360998..374603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030990654.1 → XP_030846514.1  polypeptide N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A7M7P5Z0
    Conserved Domains (2) summary
    cd02510
    Location:295 → 596
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cl26069
    Location:608 → 685
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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