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LOC579709 carbohydrate sulfotransferase 1-like [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579709, updated on 14-Dec-2023

Summary

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Gene symbol
LOC579709
Gene description
carbohydrate sulfotransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC579709 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145597.1 (15792685..15806268, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577270.1 (110052..126382)

NW_022145597.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC579951 Neighboring gene uncharacterized LOC115922476 Neighboring gene component of oligomeric golgi complex 6 Neighboring gene sodium leak channel, non-selective

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like
Names
carbohydrate sulfotransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145597.1 Reference Spur_5.0 Primary Assembly

    Range
    15792685..15806268 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030981928.1 → XP_030837788.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A7M7NKB2
    Conserved Domains (1) summary
    cl21551
    Location:254 → 420
    Sulfotransfer_3; Sulfotransferase family

  2. XM_030981929.1 → XP_030837789.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A7M7NKB2
    Conserved Domains (1) summary
    cl21551
    Location:254 → 420
    Sulfotransfer_3; Sulfotransferase family

  3. XM_030981930.1 → XP_030837790.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A7M7NKB2
    Conserved Domains (1) summary
    cl21551
    Location:254 → 420
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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