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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_012209.1 RefSeqGene
- Range
-
5002..195282
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001098503.2 → NP_001091973.1 receptor-type tyrosine-protein phosphatase eta isoform 2 precursor
See identical proteins and their annotated locations for NP_001091973.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has multiple differences in the presence and absence of exons at its 3' end, compared to variant 1. These differences produce a unique 3' UTR, compared to variant 1, and the encoded protein (isoform 2) is shorter than isoform 1.
- Source sequence(s)
-
AC026975, BC063417, BC098447, DR007037
- Consensus CDS
-
CCDS44596.1
- UniProtKB/Swiss-Prot
-
Q12913
- Related
- ENSP00000409733.2, ENST00000440289.6
- Conserved Domains (2) summary
-
- smart00060
Location:454 → 526
- FN3; Fibronectin type 3 domain
- cd00063
Location:119 → 205
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
-
NM_002843.4 → NP_002834.3 receptor-type tyrosine-protein phosphatase eta isoform 1 precursor
See identical proteins and their annotated locations for NP_002834.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AC026975, AI218139, AL359057, DR007037, U10886
- Consensus CDS
-
CCDS7945.1
- UniProtKB/Swiss-Prot
- Q12913, Q15255, Q6P4H4, Q8NHM2, Q9UDA9
- UniProtKB/TrEMBL
-
A0A8V8TP51
- Related
- ENSP00000400010.2, ENST00000418331.7
- Conserved Domains (4) summary
-
- smart00060
Location:540 → 615
- FN3; Fibronectin type 3 domain
- smart00194
Location:1040 → 1297
- PTPc; Protein tyrosine phosphatase, catalytic domain
- cd00047
Location:1067 → 1297
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00063
Location:119 → 205
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
47980559..48170839
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017018085.2 → XP_016873574.1 receptor-type tyrosine-protein phosphatase eta isoform X1
- UniProtKB/TrEMBL
-
A0A8V8TP51
-
XM_047427374.1 → XP_047283330.1 receptor-type tyrosine-protein phosphatase eta isoform X2
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
48150119..48340376
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369559.1 → XP_054225534.1 receptor-type tyrosine-protein phosphatase eta isoform X1
- UniProtKB/TrEMBL
-
A0A8V8TP51
-
XM_054369560.1 → XP_054225535.1 receptor-type tyrosine-protein phosphatase eta isoform X2