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ogt O-linked N-acetylglucosamine (GlcNAc) transferase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579289, updated on 17-Aug-2024

Summary

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Symbol
ogt
Full Name
O-linked N-acetylglucosamine (GlcNAc) transferase
Primary source
EchinoBase:ECB-GENE-23048558
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See ogt in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145596.1 (28631718..28656152)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577273.1 (250473..272434, complement)

NW_022145596.1Genomic Context describing neighboring genes Neighboring gene exosome complex exonuclease RRP44-like Neighboring gene thymosin beta Neighboring gene tubulin beta-4B chain Neighboring gene uncharacterized LOC105446899

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145596.1 Reference Spur_5.0 Primary Assembly

    Range
    28631718..28656152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030981116.1 → XP_030836976.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A7M7NIX0
    Conserved Domains (3) summary
    TIGR02917
    Location:21 → 451
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:216 → 243
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:546 → 1011
    Glyco_transf_41; Glycosyl transferase family 41

  2. XM_030981117.1 → XP_030836977.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A7M7NIJ2
    Conserved Domains (3) summary
    TIGR02917
    Location:21 → 451
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:216 → 243
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:546 → 1006
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein
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