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blcap bladder cancer associated protein [ Danio rerio (zebrafish) ]

Gene ID: 57918, updated on 2-Nov-2024

Summary

Official Symbol
blcapprovided by ZNC
Official Full Name
bladder cancer associated proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-000330-7
See related
Ensembl:ENSDARG00000052073 AllianceGenome:ZFIN:ZDB-GENE-000330-7
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
bc10; zfBc10; fj59c12; wu:fj59c12; etID17881.6
Summary
Predicted to be located in cytoplasm; membrane; and nucleus. Is expressed in myotome. Orthologous to human BLCAP (BLCAP apoptosis inducing factor). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See blcap in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (51769761..51771789, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (51769762..51771790, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 6 Neighboring gene RIPOR family member 3 Neighboring gene transmembrane protein 74B Neighboring gene proteasome inhibitor subunit 1

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
apoptosis inducing factor BLCAP

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131493.2NP_571568.1  apoptosis inducing factor BLCAP

    See identical proteins and their annotated locations for NP_571568.1

    Status: VALIDATED

    Source sequence(s)
    BX001037, EH472077, EH498291
    UniProtKB/Swiss-Prot
    Q9IB61
    Related
    ENSDARP00000068337.4, ENSDART00000073847.5
    Conserved Domains (1) summary
    pfam06726
    Location:165
    BC10; Bladder cancer-related protein BC10

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    51769761..51771789 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)