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aqr aquarius intron-binding spliceosomal factor [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 577627, updated on 17-Aug-2024

Summary

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Symbol
aqr
Full Name
aquarius intron-binding spliceosomal factor
Primary source
EchinoBase:ECB-GENE-23151470
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See aqr in Genome Data Viewer
Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145611.1 (25918504..25973624, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577186.1 (774082..830467, complement)

NW_022145611.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronosyltransferase 2C1 Neighboring gene 39S ribosomal protein L48, mitochondrial Neighboring gene uncharacterized LOC105441438 Neighboring gene opsin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA helicase aquarius
Names
intron-binding protein aquarius

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145611.1 Reference Spur_5.0 Primary Assembly

    Range
    25918504..25973624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030998654.1 → XP_030854514.1  RNA helicase aquarius isoform X2

    UniProtKB/TrEMBL
    A0A7M7PS87
    Conserved Domains (3) summary
    cd18808
    Location:1151 → 1333
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:807 → 1162
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:19 → 812
    Aquarius_N; Intron-binding protein aquarius N-terminus

  2. XM_003725417.3 → XP_003725465.2  RNA helicase aquarius isoform X1

    UniProtKB/TrEMBL
    A0A7M7GGV8

  3. XM_030998655.1 → XP_030854515.1  RNA helicase aquarius isoform X3

    UniProtKB/TrEMBL
    A0A7M7PNK4
    Conserved Domains (3) summary
    cd18808
    Location:1107 → 1289
    SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
    cd17935
    Location:763 → 1118
    EEXXQc_AQR; EEXXQ-box helicase domain of AQR
    pfam16399
    Location:2 → 768
    Aquarius_N; Intron-binding protein aquarius N-terminus
Nucleotide Protein
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