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LOC575949 polypeptide N-acetylgalactosaminyltransferase 13 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 575949, updated on 14-Dec-2023

Summary

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Gene symbol
LOC575949
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC575949 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145604.1 (20135073..20167369)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577394.1 (62504..92328)

NW_022145604.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115925838 Neighboring gene ankyrin repeat and zinc finger domain-containing protein 1 Neighboring gene uncharacterized LOC115926103 Neighboring gene uncharacterized LOC115926104 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 13 Neighboring gene transient receptor potential-gamma protein-like Neighboring gene uncharacterized LOC105446440

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145604.1 Reference Spur_5.0 Primary Assembly

    Range
    20135073..20167369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030990545.1 → XP_030846405.1  polypeptide N-acetylgalactosaminyltransferase 13

    UniProtKB/TrEMBL
    A0A7M7P736
    Conserved Domains (2) summary
    cd02510
    Location:159 → 458
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:470 → 581
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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