U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ATbp (A+T)-stretch binding protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 5740592, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ATbpprovided by FlyBase
Official Full Name
(A+T)-stretch binding proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0039946
Locus tag
Dmel_CG17172
See related
AllianceGenome:FB:FBgn0039946
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
ATBP; CG17172; CG40145; Dmel\CG17172
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Is expressed in dorsal pharyngeal muscle cell; embryonic anal pad; embryonic hindgut; embryonic/larval midgut; and organism. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ATbp in Genome Data Viewer
Location:
20F4-20F4; 1-66 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (23106003..23108331)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) XHet NW_001848859.1 (84821..87149)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene suppressor of forked Neighboring gene pseudo Neighboring gene 28S ribosomal RNA pseudogene:CR45853 Neighboring gene mir-10404-3 stem loop

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and characterization of a Drosophila homologue of ATBP. Aozasa N, et al. Insect Mol Biol, 2002 Feb. PMID 11841500
  2. A 5.9-kb tandem repeat at the euchromatin-heterochromatin boundary of the X chromosome of Drosophila melanogaster. O'Hare K, et al. Mol Genet Genomics, 2002 Jul. PMID 12172804
  3. New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk. Lu Y, et al. Nat Commun, 2016 Feb 1. PMID 26833246, Free PMC Article
  4. A Comprehensive Drosophila melanogaster Transcription Factor Interactome. Shokri L, et al. Cell Rep, 2019 Apr 16. PMID 30995488, Free PMC Article
  5. A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development. Schertel C, et al. Genome Res, 2015 Apr. PMID 25568052, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

  • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
(A+T)-stretch binding protein
Names
ATbp-PB
CG17172-PB

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    23106003..23108331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001111011.3 → NP_001104481.2  (A+T)-stretch binding protein [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001104481.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q86P48
    Conserved Domains (1) summary
    sd00017
    Location:323 → 345
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86P48.2 Q86P48

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Chemical Information
Molecular Biology Databases
Research Materials
Tools