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fam110b family with sequence similarity 110 member B [ Danio rerio (zebrafish) ]

Gene ID: 573995, updated on 2-Nov-2024

Summary

Official Symbol
fam110bprovided by ZNC
Official Full Name
family with sequence similarity 110 member Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050626-70
See related
Ensembl:ENSDARG00000088073 AllianceGenome:ZFIN:ZDB-GENE-050626-70
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fk89a03; wu:fk89a03; zgc:114139; si:dkey-43b14.3
Summary
Predicted to be located in centrosome and cytoplasm. Is expressed in brain and epiphysis. Orthologous to human FAM110B (family with sequence similarity 110 member B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See fam110b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (22208404..22286828, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (22548442..22631177, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487812 Neighboring gene thymocyte selection-associated high mobility group box Neighboring gene cytochrome P450, family 7, subfamily A, polypeptide 1 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 65 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 66

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025174.1NP_001020345.1  protein FAM110B

    See identical proteins and their annotated locations for NP_001020345.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097194
    UniProtKB/Swiss-Prot
    Q4QRD7
    Related
    ENSDARP00000138309.1, ENSDART00000168653.2
    Conserved Domains (2) summary
    pfam14160
    Location:279388
    FAM110_C; Centrosome-associated C terminus
    pfam14161
    Location:11121
    FAM110_N; Centrosome-associated N terminus

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    22208404..22286828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017358945.3XP_017214434.1  protein FAM110B isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z9R5, F1R180
  2. XM_017358941.3XP_017214430.1  protein FAM110B isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z9R5, F1R180