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PTGDR prostaglandin D2 receptor [ Homo sapiens (human) ]

Gene ID: 5729, updated on 2-Nov-2024

Summary

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Official Symbol
PTGDRprovided by HGNC
Official Full Name
prostaglandin D2 receptorprovided by HGNC
Primary source
HGNC:HGNC:9591
See related
Ensembl:ENSG00000168229 MIM:604687; AllianceGenome:HGNC:9591
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DP; AS1; DP1; ASRT1; PTGDR1
Summary
This gene encodes a member of the guanine nucleotide-binding protein (G protein)-coupled receptor (GPCR) superfamily. The receptors are seven-pass transmembrane proteins that respond to extracellular cues and activate intracellular signal transduction pathways. This protein is reported to be a receptor for prostaglandin D2, which is a mediator of allergic inflammation and allergic airway inflammation in asthma. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]
Expression
Broad expression in spleen (RPKM 1.6), colon (RPKM 1.3) and 19 other tissues See more
Orthologs
mouse all
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Genomic context

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See PTGDR in Genome Data Viewer
Location:
14q22.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (52267698..52280914)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (46474808..46488025)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (52734416..52743442)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378180 Neighboring gene CAGE-defined high expression enhancer upstream of NID2 Neighboring gene long intergenic non-protein coding RNA 2319 Neighboring gene cytochrome c oxidase subunit 5A pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:52622695-52623194 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr14:52674645-52675844 Neighboring gene pumilio domain-containing protein KIAA0020-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:52780260-52780820 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:52780821-52781380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8386 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8387 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8388 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8390 Neighboring gene prostaglandin E receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A new PTGDR promoter polymorphism in a population of children with asthma. Sanz C, et al. Pediatr Allergy Immunol, 2009 Mar. PMID 18811623
  2. Activation of the prostaglandin D2 receptor DP2/CRTH2 increases allergic inflammation in mouse. Spik I, et al. J Immunol, 2005 Mar 15. PMID 15749909
  3. Promoter genetic variants of prostanoid DP receptor (PTGDR) gene in patients with asthma. Sanz C, et al. Allergy, 2006 May. PMID 16629782
  4. Association of PTGDR gene polymorphisms with asthma in two Caucasian populations. Zhu G, et al. Genes Immun, 2007 Jul. PMID 17538632
  5. PTGDR polymorphisms and susceptibility to asthma: a meta-analysis. Lee YH, et al. Mol Biol Rep, 2013 Mar. PMID 23192614

See all (85) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The ASH1L-AS1-ASH1L axis controls NME1-mediated activation of the RAS signaling in gastric cancer.
    Title: The ASH1L-AS1-ASH1L axis controls NME1-mediated activation of the RAS signaling in gastric cancer.
  2. ATP2B1-AS1 exacerbates sepsis-induced cell apoptosis and inflammation by regulating miR-23a-3p/TLR4 axis.
    Title: ATP2B1-AS1 exacerbates sepsis-induced cell apoptosis and inflammation by regulating miR-23a-3p/TLR4 axis.
  3. High PGD2 receptor 2 levels are associated with poor prognosis in colorectal cancer patients and induce VEGF expression in colon cancer cells and migration in a zebrafish xenograft model.
    Title: High PGD(2) receptor 2 levels are associated with poor prognosis in colorectal cancer patients and induce VEGF expression in colon cancer cells and migration in a zebrafish xenograft model.
  4. GGA3 interacts with L-type prostaglandin D synthase and regulates the recycling and signaling of the DP1 receptor for prostaglandin D2 in a Rab4-dependent mechanism.
    Title: GGA3 interacts with L-type prostaglandin D synthase and regulates the recycling and signaling of the DP1 receptor for prostaglandin D(2) in a Rab4-dependent mechanism.
  5. Promoter Genotyping and mRNA Expression - Based Analysis of the PTGDR Gene in Allergy.
    Title: Promoter Genotyping and mRNA Expression - Based Analysis of the PTGDR Gene in Allergy.
  6. Loss of DP1 Aggravates Vascular Remodeling in Pulmonary Arterial Hypertension via mTORC1 Signaling.
    Title: Loss of DP1 Aggravates Vascular Remodeling in Pulmonary Arterial Hypertension via mTORC1 Signaling.
  7. -type prostaglandin D synthase regulates the trafficking of the PGD2 DP1 receptor by interacting with the GTPase Rab4
    Title: L-type prostaglandin D synthase regulates the trafficking of the PGD(2) DP1 receptor by interacting with the GTPase Rab4.
  8. We conclude that DP1 receptors promote the survival of eosinophils via serum response element induction and induction of pro-inflammatory genes
    Title: DP1 receptor signaling prevents the onset of intrinsic apoptosis in eosinophils and functions as a transcriptional modulator.
  9. PGD2 signaling through the D-prostanoid receptor 1 (DP1) receptor is necessary for optimal microglia/macrophage activation and IFN expression after infection with a neurotropic coronavirus
    Title: Virus-induced inflammasome activation is suppressed by prostaglandin D(2)/DP1 signaling.
  10. Polymorphisms of prostaglandin D receptor (PTGDR) gene influence basal promoter activity and gene expression, as well as the cytokine secretory pattern.
    Title: PTGDR gene expression and response to dexamethasone treatment in an in vitro model.
Submit: New GeneRIF Correction See all GeneRIFs (56)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Asthma-related traits, susceptibility to, 1
MedGen: C1846534 OMIM: 607277 GeneReviews: Not available
not available

EBI GWAS Catalog

Description
Genome-wide association studies and epistasis analyses of candidate genes related to age at menarche and age at natural menopause in a Korean population.
EBI GWAS Catalog
Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia.
EBI GWAS Catalog
Large-scale genetic study in East Asians identifies six new loci associated with colorectal cancer risk.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC49004

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables prostaglandin D receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables prostaglandin D receptor activity NAS
Non-traceable Author Statement
more info
 PubMed 
enables prostaglandin J receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in adenosine metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to prostaglandin D stimulus IEA
Inferred from Electronic Annotation
more info
  
involved_in inflammatory response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in male sex determination IEA
Inferred from Electronic Annotation
more info
  
involved_in mast cell degranulation IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of cytosolic calcium ion concentration IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sleep IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
prostaglandin D2 receptor
Names
PGD2 receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012118.2 RefSeqGene

    Range
    5002..14028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_000953.3 → NP_000944.1  prostaglandin D2 receptor isoform 1

    See identical proteins and their annotated locations for NP_000944.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK026202, AL365475, BC040968
    Consensus CDS
    CCDS9707.1
    UniProtKB/Swiss-Prot
    G3V5L3, Q13250, Q13251, Q13258, Q1ZZ52
    Related
    ENSP00000303424.2, ENST00000306051.3
    Conserved Domains (1) summary
    cd15140
    Location:17 → 335
    7tmA_PGD2; prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. NM_001281469.2 → NP_001268398.1  prostaglandin D2 receptor isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) contains an alternate exon, which results in a frameshift, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AK026202, AL365475, CD013871
    Consensus CDS
    CCDS61454.1
    UniProtKB/Swiss-Prot
    Q13258
    Related
    ENSP00000452408.1, ENST00000553372.1
    Conserved Domains (1) summary
    pfam00001
    Location:59 → 214
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    52267698..52280914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005267891.5 → XP_005267948.1  prostaglandin D2 receptor isoform X1

    See identical proteins and their annotated locations for XP_005267948.1

    UniProtKB/Swiss-Prot
    G3V5L3, Q13250, Q13251, Q13258, Q1ZZ52
    Conserved Domains (1) summary
    cd15140
    Location:17 → 335
    7tmA_PGD2; prostaglandin D2 receptor, member of the class A family of seven-transmembrane G protein-coupled receptors

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    46474808..46488025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054376444.1 → XP_054232419.1  prostaglandin D2 receptor isoform X1

    UniProtKB/Swiss-Prot
    G3V5L3, Q13250, Q13251, Q13258, Q1ZZ52
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q13258.2 GenPept UniProtKB/Swiss-Prot:Q13258

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