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GT391_RS03585 polysaccharide lyase family protein [ Pectobacterium brasiliense ]

Gene ID: 57241572, updated on 27-Mar-2023

Summary

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Gene symbol
GT391_RS03585
Gene description
polysaccharide lyase family protein
Locus tag
GT391_RS03585
Gene type
protein coding
Organism
Pectobacterium brasiliense (strain: 1692, nat-host: potato)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
Old locus tag
GT391_03585
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Genomic context

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NZ_CP047495.1Genomic Context describing neighboring genes Neighboring gene DUF485 domain-containing protein Neighboring gene cation/acetate symporter ActP Neighboring gene Rpn family recombination-promoting nuclease/putative transposase Neighboring gene HlyD family efflux transporter periplasmic adaptor subunit Neighboring gene HlyD family efflux transporter periplasmic adaptor subunit Neighboring gene efflux RND transporter periplasmic adaptor subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP047495.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4. McDonough MA, et al. FEBS Lett, 2004 May 7. PMID 15135077

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polysaccharide lyase family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP047495.1 Reference assembly

    Range
    794038..795768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_039318889.1 polysaccharide lyase family protein [Pectobacterium brasiliense]

    See identical proteins and their annotated locations for WP_039318889.1

    Conserved Domains (3) summary
    cd10316
    Location:322 → 403
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cd10317
    Location:419 → 573
    RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cd10320
    Location:25 → 291
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
Nucleotide Protein
Heading Accession and Version