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kirrel3b kirre like nephrin family adhesion molecule 3b [ Danio rerio (zebrafish) ]

Gene ID: 572369, updated on 2-Nov-2024

Summary

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Official Symbol
kirrel3bprovided by ZNC
Official Full Name
kirre like nephrin family adhesion molecule 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-100713-3
See related
AllianceGenome:ZFIN:ZDB-GENE-100713-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
kirrel3
Summary
Predicted to be located in membrane. Orthologous to human KIRREL3 (kirre like nephrin family adhesion molecule 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See kirrel3b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (47520479..47885919, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (47778859..47890310, complement)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488231 Neighboring gene BARX homeobox 2 Neighboring gene somatolactin alpha Neighboring gene v-ets avian erythroblastosis virus E26 oncogene homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Maternal exposure to environmental antibiotic mixture during gravid period predicts gastrointestinal effects in zebrafish offspring. Qiu W, et al. J Hazard Mater, 2020 Nov 15. PMID 32526431
  2. A model organism approach: defining the role of Neph proteins as regulators of neuron and kidney morphogenesis. Neumann-Haefelin E, et al. Hum Mol Genet, 2010 Jun 15. PMID 20233749
  3. Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses. Petit D, et al. Mol Biol Evol, 2015 Apr. PMID 25534026, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3 b
neph2b
zmp:0000001115

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    47520479..47885919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467925.2 → XP_021323600.1  kin of IRRE-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A8M9PR44
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain

  2. XM_021467921.2 → XP_021323596.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PMU4
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain

  3. XM_021467924.2 → XP_021323599.1  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8M9PG29
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain

  4. XM_021467923.2 → XP_021323598.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A8M9PAN4
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain

  5. XM_021467922.2 → XP_021323597.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A8M9P1K3
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain

  6. XM_021467920.2 → XP_021323595.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PR41
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain

  7. XM_021467919.2 → XP_021323594.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PG27
    Conserved Domains (5) summary
    cd05759
    Location:146 → 227
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:399 → 496
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:35 → 124
    IG_like; Immunoglobulin like
    pfam13895
    Location:235 → 312
    Ig_2; Immunoglobulin domain
    cl28434
    Location:316 → 397
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
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