U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zmp:0000001167 zmp:0000001167 [ Danio rerio (zebrafish) ]

Gene ID: 571837, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
zmp:0000001167provided by ZNC
Official Full Name
zmp:0000001167provided by ZNC
Primary source
ZFIN:ZDB-GENE-140106-127
See related
AllianceGenome:ZFIN:ZDB-GENE-140106-127
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable phosphatase regulator activity and protein kinase binding activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zmp:0000001167 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (4581428..4625027)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (4454863..4498477)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene p53-induced death domain protein 1 Neighboring gene patatin-like phospholipase domain containing 2 Neighboring gene uncharacterized LOC137489319 Neighboring gene protein-glucosylgalactosylhydroxylysine glucosidase Neighboring gene DEAF1 transcription factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables phosphatase regulator activity IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein phosphatase 1 regulatory subunit 12A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    4581428..4625027
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068217477.1 → XP_068073578.1  protein phosphatase 1 regulatory subunit 12A isoform X1

  2. XM_002666774.7 → XP_002666820.2  protein phosphatase 1 regulatory subunit 12A isoform X2

    UniProtKB/TrEMBL
    A0A8M1RMT9
    Conserved Domains (4) summary
    cd00204
    Location:80 → 263
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:57 → 149
    Ank_2; Ankyrin repeats (3 copies)
    pfam15898
    Location:789 → 888
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
    sd00045
    Location:57 → 83
    ANK; ANK repeat [structural motif]

  3. XM_068217478.1 → XP_068073579.1  protein phosphatase 1 regulatory subunit 12A isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials