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anapc13 anaphase promoting complex subunit 13 [ Danio rerio (zebrafish) ]

Gene ID: 569473, updated on 12-Sep-2024

Summary

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Official Symbol
anapc13provided by ZNC
Official Full Name
anaphase promoting complex subunit 13provided by ZNC
Primary source
ZFIN:ZDB-GENE-091204-298
See related
Ensembl:ENSDARG00000078435 AllianceGenome:ZFIN:ZDB-GENE-091204-298
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-269g4.3
Summary
Predicted to be involved in protein K11-linked ubiquitination. Predicted to be part of anaphase-promoting complex. Orthologous to human ANAPC13 (anaphase promoting complex subunit 13). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See anapc13 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (24536240..24537061)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (24499635..24500456)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 1a Neighboring gene uncharacterized LOC137488816 Neighboring gene Rho GTPase activating protein 32b Neighboring gene sterol-C5-desaturase Neighboring gene immunoglobulin superfamily, member 9Bb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
involved_in protein K11-linked ubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of anaphase-promoting complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of anaphase-promoting complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
anaphase-promoting complex subunit 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302785.1 → NP_001289714.1  anaphase-promoting complex subunit 13

    See identical proteins and their annotated locations for NP_001289714.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    CR759955, EH542322, EH556652
    UniProtKB/TrEMBL
    A0A8M1P146, E7FFM7
    Related
    ENSDARP00000123603.1, ENSDART00000145448.2
    Conserved Domains (1) summary
    pfam05839
    Location:1 → 73
    Apc13p; Apc13p protein

  2. NM_001302786.1 → NP_001289715.1  anaphase-promoting complex subunit 13

    See identical proteins and their annotated locations for NP_001289715.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    CR759955, EH556652
    UniProtKB/TrEMBL
    A0A8M1P146, E7FFM7
    Related
    ENSDARP00000097738.3, ENSDART00000109886.5
    Conserved Domains (1) summary
    pfam05839
    Location:1 → 73
    Apc13p; Apc13p protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    24536240..24537061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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