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dhx36 DEAH (Asp-Glu-Ala-His) box polypeptide 36 [ Danio rerio (zebrafish) ]

Gene ID: 569072, updated on 2-Nov-2024

Summary

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Official Symbol
dhx36provided by ZNC
Official Full Name
DEAH (Asp-Glu-Ala-His) box polypeptide 36provided by ZNC
Primary source
ZFIN:ZDB-GENE-050419-20
See related
Ensembl:ENSDARG00000101059 AllianceGenome:ZFIN:ZDB-GENE-050419-20
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-119o24.1
Summary
Predicted to enable helicase activity and nucleic acid binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human DHX36 (DEAH-box helicase 36). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See dhx36 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (31610632..31838238)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (31631698..31867782)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene melanocortin 1 receptor Neighboring gene differentially expressed in FDCP 8 homolog Neighboring gene uncharacterized LOC137488299 Neighboring gene uncharacterized LOC137488300 Neighboring gene uncharacterized LOC110438098 Neighboring gene uncharacterized LOC137488301 Neighboring gene olfactory receptor C family, s2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Viral infection-induced changes in the expression profile of non-RLR DExD/H-box RNA helicases (DDX1, DDX3, DHX9, DDX21 and DHX36) in zebrafish and common carp. Mojzesz M, et al. Fish Shellfish Immunol, 2020 Sep. PMID 32526283
  2. Type I interferon-dependent response of zebrafish larvae during tilapia lake virus (TiLV) infection. Widziolek M, et al. Dev Comp Immunol, 2021 Mar. PMID 33242567
  3. Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition. Despic V, et al. Genome Res, 2017 Jul. PMID 28381614, Free PMC Article
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables G-quadruplex DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables G-quadruplex RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ATP-dependent DNA/RNA helicase DHX36
NP_001122016.2
XP_005159264.2
XP_068070917.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128544.2 → NP_001122016.2  ATP-dependent DNA/RNA helicase DHX36

    Status: PROVISIONAL

    Source sequence(s)
    BX908763, BX927166
    UniProtKB/TrEMBL
    A0A8M1NHJ3
    Related
    ENSDARP00000139511.2, ENSDART00000165660.2
    Conserved Domains (1) summary
    COG1643
    Location:193 → 992
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    31610632..31838238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159207.5 → XP_005159264.2  ATP-dependent DNA/RNA helicase DHX36 isoform X1

    UniProtKB/TrEMBL
    A0A8M1NHJ3, A0A8M2B5Q1
    Conserved Domains (1) summary
    COG1643
    Location:193 → 983
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_068214816.1 → XP_068070917.1  ATP-dependent DNA/RNA helicase DHX36 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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