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cldn34a claudin 34a [ Danio rerio (zebrafish) ]

Gene ID: 568833, updated on 17-Aug-2024

Summary

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Official Symbol
cldn34aprovided by ZNC
Official Full Name
claudin 34aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130819-3
See related
Ensembl:ENSDARG00000087805 AllianceGenome:ZFIN:ZDB-GENE-130819-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cldn34; gb:eh493890
Summary
Orthologous to human CLDN34 (claudin 34). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (30455839..30465031)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (30469849..30478430)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 7 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene shroom family member 2a Neighboring gene claudin 33b Neighboring gene WWC family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic revision of the claudin gene family. Baltzegar DA, et al. Mar Genomics, 2013 Sep. PMID 23726886
  2. Zebrafish etv2 knock-in line labels vascular endothelial and blood progenitor cells. Chestnut B, et al. Dev Dyn, 2020 Feb. PMID 31705559, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in anchoring junction IEA
Inferred from Electronic Annotation
more info
  
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
claudin-34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    30455839..30465031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692189.9 → XP_697281.2  claudin-34

    UniProtKB/TrEMBL
    A0A8N7TDY7, E7FDA9
    Conserved Domains (1) summary
    cl21598
    Location:20 → 194
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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