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ribc2 RIB43A domain with coiled-coils 2 [ Danio rerio (zebrafish) ]

Gene ID: 568595, updated on 2-Nov-2024

Summary

Official Symbol
ribc2provided by ZNC
Official Full Name
RIB43A domain with coiled-coils 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050411-27
See related
Ensembl:ENSDARG00000075177 AllianceGenome:ZFIN:ZDB-GENE-050411-27
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7139664; zgc:171573
Summary
Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; otic vesicle; and pronephric duct. Orthologous to human RIBC2 (RIB43A domain with coiled-coils 2). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See ribc2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (16747594..16755340, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (16651194..16658940, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 8a, tandem duplicate 1 Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
RIB43A-like with coiled-coils protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243149.1NP_001230078.1  RIB43A-like with coiled-coils protein 2

    Status: VALIDATED

    Source sequence(s)
    BX004976, CT732545, EH436182
    UniProtKB/TrEMBL
    A0A8M1NYQ7, E7F099
    Related
    ENSDARP00000109190.1, ENSDART00000124729.4
    Conserved Domains (1) summary
    pfam05914
    Location:4367
    RIB43A; RIB43A

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    16747594..16755340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)